Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660743_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27531115 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 4164683 | 15.127186094715018 | No Hit |
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 101517 | 0.3687355197927872 | No Hit |
TAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 88182 | 0.3202994139539935 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 51287 | 0.1862874060858051 | No Hit |
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAAAAA | 31888 | 0.11582531255998893 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTA | 31480 | 0.11434335296627107 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 654480 | 0.0 | 92.29462 | 1 |
AGCAGTG | 692620 | 0.0 | 89.09256 | 2 |
GCAGTGG | 707175 | 0.0 | 87.52328 | 3 |
AGTGGTA | 744480 | 0.0 | 83.38605 | 5 |
CAGTGGT | 741760 | 0.0 | 83.272514 | 4 |
GTGGTAT | 749460 | 0.0 | 82.83009 | 6 |
TGGTATC | 757985 | 0.0 | 82.39978 | 7 |
GGTATCA | 762380 | 0.0 | 81.98437 | 8 |
GTATCAA | 769890 | 0.0 | 81.0566 | 9 |
TAGCAGT | 22145 | 0.0 | 57.628143 | 1 |
AGTACTT | 664165 | 0.0 | 44.36059 | 20-21 |
GAGTACT | 661615 | 0.0 | 43.27006 | 20-21 |
TACTTTT | 664605 | 0.0 | 43.17812 | 22-23 |
GTACTTT | 653105 | 0.0 | 42.71684 | 22-23 |
AGAGTAC | 737390 | 0.0 | 42.664944 | 18-19 |
ACGCAGA | 755015 | 0.0 | 42.59385 | 14-15 |
ATCAACG | 764495 | 0.0 | 42.13594 | 10-11 |
CAACGCA | 764170 | 0.0 | 42.013195 | 12-13 |
GCAGAGT | 765790 | 0.0 | 41.957184 | 16-17 |
AACGCAG | 754320 | 0.0 | 41.26346 | 14-15 |