Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660738_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28939891 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 1546799 | 5.3448680922813425 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 56317 | 0.19459990364165505 | No Hit |
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 40540 | 0.1400834578126089 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 204005 | 0.0 | 85.04872 | 8 |
AGTGGTA | 205910 | 0.0 | 84.37036 | 5 |
GTGGTAT | 206860 | 0.0 | 84.009125 | 6 |
AAGCAGT | 208485 | 0.0 | 83.61967 | 1 |
TGGTATC | 207325 | 0.0 | 83.439674 | 7 |
GTATCAA | 207650 | 0.0 | 83.42828 | 9 |
GCAGTGG | 212160 | 0.0 | 82.267334 | 3 |
CAGTGGT | 215940 | 0.0 | 80.31726 | 4 |
AGCAGTG | 217930 | 0.0 | 80.07491 | 2 |
CAACGCA | 200840 | 0.0 | 44.651928 | 12-13 |
ATCAACG | 202635 | 0.0 | 44.33986 | 10-11 |
ACGCAGA | 204285 | 0.0 | 43.942535 | 14-15 |
AGAGTAC | 203930 | 0.0 | 43.32361 | 18-19 |
TCAACGC | 200965 | 0.0 | 43.20783 | 12-13 |
AACGCAG | 202760 | 0.0 | 42.945625 | 14-15 |
GAGTACT | 199730 | 0.0 | 42.419174 | 20-21 |
CGCAGAG | 205305 | 0.0 | 42.35537 | 16-17 |
TATCAAC | 206585 | 0.0 | 41.89258 | 10-11 |
AGTACTT | 210390 | 0.0 | 41.534397 | 20-21 |
GTACTTT | 208600 | 0.0 | 40.485104 | 22-23 |