Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660730_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29346392 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 1307812 | 4.4564660623357035 | No Hit |
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 47257 | 0.16103172069670438 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 177700 | 0.0 | 82.50451 | 8 |
AGTGGTA | 177705 | 0.0 | 81.813644 | 5 |
AAGCAGT | 172855 | 0.0 | 81.70279 | 1 |
TGGTATC | 179845 | 0.0 | 81.446625 | 7 |
GTATCAA | 180590 | 0.0 | 81.108536 | 9 |
GTGGTAT | 181125 | 0.0 | 80.336235 | 6 |
GCAGTGG | 181080 | 0.0 | 80.26334 | 3 |
CAGTGGT | 188140 | 0.0 | 77.14947 | 4 |
AGCAGTG | 188415 | 0.0 | 76.81586 | 2 |
CAACGCA | 172975 | 0.0 | 44.150974 | 12-13 |
ATCAACG | 174755 | 0.0 | 43.867798 | 10-11 |
ACGCAGA | 176160 | 0.0 | 43.423363 | 14-15 |
AGAGTAC | 179055 | 0.0 | 42.65342 | 18-19 |
TCAACGC | 172760 | 0.0 | 42.30129 | 12-13 |
AACGCAG | 174405 | 0.0 | 41.958855 | 14-15 |
GAGTACT | 173610 | 0.0 | 41.773506 | 20-21 |
AGTACTT | 181990 | 0.0 | 41.632267 | 20-21 |
CGCAGAG | 177200 | 0.0 | 41.291836 | 16-17 |
TATCAAC | 180135 | 0.0 | 40.64628 | 10-11 |
GTACTTT | 183480 | 0.0 | 39.49459 | 22-23 |