Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660728_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24318306 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 1277962 | 5.255144005507621 | No Hit |
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 28275 | 0.11627043429752056 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 26242 | 0.10791047698799415 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 163175 | 0.0 | 85.738205 | 8 |
AGTGGTA | 164095 | 0.0 | 85.23434 | 5 |
TGGTATC | 164735 | 0.0 | 84.58745 | 7 |
GTATCAA | 165540 | 0.0 | 84.4218 | 9 |
GTGGTAT | 166545 | 0.0 | 84.01483 | 6 |
GCAGTGG | 171595 | 0.0 | 82.046104 | 3 |
AAGCAGT | 172320 | 0.0 | 81.67835 | 1 |
CAGTGGT | 174945 | 0.0 | 80.03456 | 4 |
AGCAGTG | 179790 | 0.0 | 78.3822 | 2 |
CAACGCA | 160585 | 0.0 | 44.819286 | 12-13 |
ATCAACG | 161450 | 0.0 | 44.64858 | 10-11 |
ACGCAGA | 162735 | 0.0 | 44.249523 | 14-15 |
AGAGTAC | 162670 | 0.0 | 43.710773 | 18-19 |
TCAACGC | 160630 | 0.0 | 43.62152 | 12-13 |
AACGCAG | 162140 | 0.0 | 43.31882 | 14-15 |
GAGTACT | 159100 | 0.0 | 43.15985 | 20-21 |
CGCAGAG | 163920 | 0.0 | 42.788383 | 16-17 |
TATCAAC | 164945 | 0.0 | 42.304806 | 10-11 |
AGTACTT | 167815 | 0.0 | 42.04742 | 20-21 |
GTACTTT | 168210 | 0.0 | 40.820442 | 22-23 |