Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660700_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28573444 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 1627942 | 5.69739510574924 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 107053 | 0.37465907154909295 | No Hit |
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 38058 | 0.13319360452313694 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 34771 | 0.12168991599332583 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 216250 | 0.0 | 84.73744 | 8 |
AGTGGTA | 217300 | 0.0 | 84.73586 | 5 |
GTGGTAT | 217950 | 0.0 | 84.25672 | 6 |
TGGTATC | 217505 | 0.0 | 84.01052 | 7 |
AAGCAGT | 225285 | 0.0 | 83.71027 | 1 |
GTATCAA | 218460 | 0.0 | 83.11473 | 9 |
GCAGTGG | 229100 | 0.0 | 81.671364 | 3 |
CAGTGGT | 227640 | 0.0 | 81.33292 | 4 |
AGCAGTG | 234345 | 0.0 | 80.59333 | 2 |
CAACGCA | 213850 | 0.0 | 44.73766 | 12-13 |
ATCAACG | 215030 | 0.0 | 44.521255 | 10-11 |
ACGCAGA | 217725 | 0.0 | 44.199814 | 14-15 |
AGAGTAC | 218360 | 0.0 | 43.696667 | 18-19 |
AGTACTT | 217310 | 0.0 | 42.767467 | 20-21 |
TCAACGC | 214155 | 0.0 | 42.400997 | 12-13 |
AACGCAG | 215405 | 0.0 | 41.93636 | 14-15 |
TATCAAC | 218290 | 0.0 | 41.496624 | 10-11 |
GAGTACT | 209995 | 0.0 | 41.21731 | 20-21 |
CGCAGAG | 219825 | 0.0 | 40.97159 | 16-17 |
GCAGAGT | 234090 | 0.0 | 40.865303 | 16-17 |