Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660672_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30188876 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 870002 | 2.8818628424589243 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 34696 | 0.11492975094534821 | No Hit |
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 30600 | 0.10136183937421188 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 118555 | 0.0 | 79.46684 | 8 |
GTGGTAT | 121680 | 0.0 | 77.62672 | 6 |
GTATCAA | 121440 | 0.0 | 77.40104 | 9 |
AGTGGTA | 122480 | 0.0 | 77.15804 | 5 |
TGGTATC | 122470 | 0.0 | 76.99174 | 7 |
AAGCAGT | 128325 | 0.0 | 74.34442 | 1 |
GCAGTGG | 132045 | 0.0 | 71.97449 | 3 |
CAGTGGT | 134920 | 0.0 | 70.2841 | 4 |
AGCAGTG | 138835 | 0.0 | 68.77641 | 2 |
CAACGCA | 115135 | 0.0 | 43.318993 | 12-13 |
ATCAACG | 117015 | 0.0 | 42.705246 | 10-11 |
ACGCAGA | 118895 | 0.0 | 41.999516 | 14-15 |
AGAGTAC | 119885 | 0.0 | 41.327095 | 18-19 |
TCAACGC | 114465 | 0.0 | 41.017788 | 12-13 |
AACGCAG | 117155 | 0.0 | 39.96072 | 14-15 |
GAGTACT | 114160 | 0.0 | 39.75448 | 20-21 |
CGCAGAG | 120400 | 0.0 | 38.898262 | 16-17 |
AGTACTT | 125715 | 0.0 | 38.430683 | 20-21 |
TATCAAC | 122805 | 0.0 | 38.37364 | 10-11 |
GTACTTT | 120665 | 0.0 | 37.509415 | 22-23 |