Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660639_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28427380 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 804469 | 2.829909052469837 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCACCTCATCTCGTATG | 218696 | 0.7693146536895064 | TruSeq Adapter, Index 7 (97% over 35bp) |
AGATCGGAAGAGCACACGTCTGAAGTCCAGTCACCACCTCATCTCGTATG | 75728 | 0.266391063826494 | TruSeq Adapter, Index 7 (97% over 35bp) |
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 28623 | 0.10068813939237455 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 109905 | 0.0 | 79.475555 | 8 |
AGTGGTA | 111735 | 0.0 | 78.57762 | 5 |
GTGGTAT | 111785 | 0.0 | 78.35331 | 6 |
GTATCAA | 111785 | 0.0 | 77.916145 | 9 |
TGGTATC | 113035 | 0.0 | 77.33303 | 7 |
AAGCAGT | 119715 | 0.0 | 73.97334 | 1 |
GCAGTGG | 121900 | 0.0 | 72.47233 | 3 |
CAGTGGT | 124380 | 0.0 | 70.81197 | 4 |
AGCAGTG | 130265 | 0.0 | 68.12485 | 2 |
CAACGCA | 106135 | 0.0 | 43.562157 | 12-13 |
ATCAACG | 107955 | 0.0 | 42.897392 | 10-11 |
ACGCAGA | 109990 | 0.0 | 42.070057 | 14-15 |
TCAACGC | 105760 | 0.0 | 41.104153 | 12-13 |
AGAGTAC | 112410 | 0.0 | 40.918594 | 18-19 |
AACGCAG | 108475 | 0.0 | 39.971893 | 14-15 |
GAGTACT | 106795 | 0.0 | 39.40756 | 20-21 |
AGTACTT | 115185 | 0.0 | 39.04843 | 20-21 |
CGCAGAG | 111740 | 0.0 | 38.785244 | 16-17 |
TATCAAC | 113220 | 0.0 | 38.480904 | 10-11 |
GCAGAGT | 126140 | 0.0 | 36.76405 | 16-17 |