Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660630_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33733376 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 1161009 | 3.4417219314189005 | No Hit |
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 35785 | 0.10608188163556471 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 159485 | 0.0 | 80.564865 | 8 |
AGTGGTA | 162955 | 0.0 | 79.09442 | 5 |
GTGGTAT | 163455 | 0.0 | 78.8036 | 6 |
TGGTATC | 163355 | 0.0 | 78.63034 | 7 |
GTATCAA | 163115 | 0.0 | 78.55013 | 9 |
AAGCAGT | 167005 | 0.0 | 77.6507 | 1 |
GCAGTGG | 171145 | 0.0 | 75.71305 | 3 |
CAGTGGT | 175480 | 0.0 | 73.66859 | 4 |
AGCAGTG | 181175 | 0.0 | 71.72641 | 2 |
CAACGCA | 156130 | 0.0 | 43.17663 | 12-13 |
ATCAACG | 158345 | 0.0 | 42.697296 | 10-11 |
ACGCAGA | 160065 | 0.0 | 42.175365 | 14-15 |
AGAGTAC | 160885 | 0.0 | 41.429436 | 18-19 |
TCAACGC | 155440 | 0.0 | 41.07676 | 12-13 |
GAGTACT | 151040 | 0.0 | 40.51468 | 20-21 |
AACGCAG | 157865 | 0.0 | 40.354977 | 14-15 |
AGTACTT | 161295 | 0.0 | 40.025135 | 20-21 |
CGCAGAG | 162000 | 0.0 | 39.20745 | 16-17 |
TATCAAC | 164890 | 0.0 | 38.84088 | 10-11 |
GTACTTT | 159990 | 0.0 | 38.16566 | 22-23 |