Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660615_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21617577 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 682102 | 3.1553119944941104 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 55290 | 0.25576409419057466 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 28455 | 0.13162899801397723 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 90790 | 0.0 | 81.88891 | 8 |
AGTGGTA | 92775 | 0.0 | 80.5414 | 5 |
GTGGTAT | 93055 | 0.0 | 80.027245 | 6 |
GTATCAA | 93085 | 0.0 | 79.74392 | 9 |
TGGTATC | 93185 | 0.0 | 79.735344 | 7 |
AAGCAGT | 101350 | 0.0 | 74.77585 | 1 |
GCAGTGG | 101520 | 0.0 | 74.32882 | 3 |
CAGTGGT | 101855 | 0.0 | 73.66386 | 4 |
AGCAGTG | 108110 | 0.0 | 70.09504 | 2 |
CAACGCA | 88325 | 0.0 | 43.83228 | 12-13 |
ATCAACG | 89925 | 0.0 | 43.00687 | 10-11 |
ACGCAGA | 90810 | 0.0 | 42.603806 | 14-15 |
TCAACGC | 87840 | 0.0 | 42.16686 | 12-13 |
AGAGTAC | 92355 | 0.0 | 41.332386 | 18-19 |
AACGCAG | 89620 | 0.0 | 41.302612 | 14-15 |
GAGTACT | 88285 | 0.0 | 40.52322 | 20-21 |
CGCAGAG | 92470 | 0.0 | 39.931816 | 16-17 |
AGTACTT | 94215 | 0.0 | 39.820644 | 20-21 |
TATCAAC | 94575 | 0.0 | 39.21023 | 10-11 |
GTACTTT | 94335 | 0.0 | 37.95743 | 22-23 |