Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660586_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30622697 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 1389822 | 4.538535583590172 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 73686 | 0.2406254419720118 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 53663 | 0.175239300444373 | No Hit |
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 37385 | 0.12208265000303532 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 180265 | 0.0 | 83.20621 | 8 |
AGTGGTA | 183725 | 0.0 | 81.8963 | 5 |
GTGGTAT | 183640 | 0.0 | 81.842545 | 6 |
GTATCAA | 183510 | 0.0 | 81.571815 | 9 |
TGGTATC | 183805 | 0.0 | 81.50457 | 7 |
AAGCAGT | 191975 | 0.0 | 79.78276 | 1 |
GCAGTGG | 195520 | 0.0 | 77.846596 | 3 |
CAGTGGT | 195620 | 0.0 | 77.18844 | 4 |
AGCAGTG | 202355 | 0.0 | 75.69159 | 2 |
CAACGCA | 177070 | 0.0 | 44.698856 | 12-13 |
ATCAACG | 179350 | 0.0 | 44.17342 | 10-11 |
ACGCAGA | 181365 | 0.0 | 43.649353 | 14-15 |
AGAGTAC | 182650 | 0.0 | 42.78614 | 18-19 |
TCAACGC | 176780 | 0.0 | 42.402744 | 12-13 |
AACGCAG | 179895 | 0.0 | 41.590122 | 14-15 |
AGTACTT | 184400 | 0.0 | 41.55637 | 20-21 |
GAGTACT | 176055 | 0.0 | 40.934456 | 20-21 |
CGCAGAG | 183840 | 0.0 | 40.567234 | 16-17 |
TATCAAC | 186135 | 0.0 | 40.190525 | 10-11 |
GCAGAGT | 196750 | 0.0 | 39.91025 | 16-17 |