Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660582_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33624873 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 1507591 | 4.483558941620389 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 67941 | 0.20205578174228345 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 48252 | 0.14350091374322813 | No Hit |
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 42311 | 0.12583244552328868 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 194455 | 0.0 | 82.66618 | 8 |
AGTGGTA | 196910 | 0.0 | 82.01668 | 5 |
GTATCAA | 197275 | 0.0 | 81.312996 | 9 |
GTGGTAT | 198340 | 0.0 | 81.3123 | 6 |
TGGTATC | 198155 | 0.0 | 81.106026 | 7 |
AAGCAGT | 204740 | 0.0 | 79.76347 | 1 |
CAGTGGT | 210140 | 0.0 | 77.126526 | 4 |
GCAGTGG | 210880 | 0.0 | 77.10883 | 3 |
AGCAGTG | 220335 | 0.0 | 74.18103 | 2 |
CAACGCA | 189570 | 0.0 | 44.51453 | 12-13 |
ATCAACG | 193160 | 0.0 | 43.738018 | 10-11 |
ACGCAGA | 194655 | 0.0 | 43.417217 | 14-15 |
AGAGTAC | 197415 | 0.0 | 42.537712 | 18-19 |
TCAACGC | 189565 | 0.0 | 42.218105 | 12-13 |
AACGCAG | 192545 | 0.0 | 41.489346 | 14-15 |
AGTACTT | 200055 | 0.0 | 41.182404 | 20-21 |
GAGTACT | 189785 | 0.0 | 40.87768 | 20-21 |
CGCAGAG | 196105 | 0.0 | 40.649788 | 16-17 |
TATCAAC | 201095 | 0.0 | 39.87183 | 10-11 |
GCAGAGT | 214935 | 0.0 | 39.285656 | 16-17 |