Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660572_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41176227 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 2250986 | 5.466712625224258 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 52161 | 0.1266774636733958 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 272460 | 0.0 | 86.23732 | 8 |
GTGGTAT | 274725 | 0.0 | 85.393074 | 6 |
AGTGGTA | 275650 | 0.0 | 85.187126 | 5 |
GTATCAA | 275555 | 0.0 | 85.11008 | 9 |
TGGTATC | 275650 | 0.0 | 85.079254 | 7 |
AAGCAGT | 288045 | 0.0 | 82.50345 | 1 |
GCAGTGG | 293795 | 0.0 | 80.76036 | 3 |
CAGTGGT | 291485 | 0.0 | 80.72652 | 4 |
AGCAGTG | 301390 | 0.0 | 78.85269 | 2 |
CAACGCA | 269325 | 0.0 | 44.98441 | 12-13 |
ATCAACG | 271575 | 0.0 | 44.657574 | 10-11 |
ACGCAGA | 274940 | 0.0 | 44.04716 | 14-15 |
TCAACGC | 269365 | 0.0 | 43.822372 | 12-13 |
AGAGTAC | 274580 | 0.0 | 43.463737 | 18-19 |
AACGCAG | 272500 | 0.0 | 43.24007 | 14-15 |
GAGTACT | 267285 | 0.0 | 42.923653 | 20-21 |
CGCAGAG | 277100 | 0.0 | 42.46212 | 16-17 |
AGTACTT | 278220 | 0.0 | 42.33746 | 20-21 |
TATCAAC | 278120 | 0.0 | 42.17427 | 10-11 |
GTACTTT | 276690 | 0.0 | 41.53293 | 22-23 |