##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548183_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2524145 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.13010187608081 31.0 31.0 33.0 30.0 34.0 2 31.521537391869327 31.0 31.0 34.0 30.0 34.0 3 31.632912530777748 31.0 31.0 34.0 30.0 34.0 4 35.444085819158566 37.0 35.0 37.0 33.0 37.0 5 35.30475586782851 37.0 35.0 37.0 33.0 37.0 6 35.346762170952935 37.0 35.0 37.0 33.0 37.0 7 35.75758643025658 37.0 35.0 37.0 35.0 37.0 8 35.75131698060135 37.0 35.0 37.0 35.0 37.0 9 37.49299584611819 39.0 37.0 39.0 35.0 39.0 10 36.777928763997316 39.0 37.0 39.0 32.0 39.0 11 36.47345932979286 39.0 35.0 39.0 32.0 39.0 12 35.842600563755255 37.0 35.0 39.0 31.0 39.0 13 35.58606815377088 37.0 35.0 39.0 30.0 39.0 14 36.495556713263305 38.0 35.0 40.0 31.0 41.0 15 36.747766471419034 38.0 35.0 41.0 31.0 41.0 16 36.863803783063176 38.0 35.0 41.0 31.0 41.0 17 36.72875052740631 38.0 35.0 40.0 31.0 41.0 18 36.66197147945146 38.0 35.0 40.0 31.0 41.0 19 36.58709701700972 38.0 35.0 40.0 31.0 41.0 20 36.4743352699627 38.0 35.0 40.0 31.0 41.0 21 36.31981918629873 38.0 35.0 40.0 30.0 41.0 22 36.250425391568236 38.0 35.0 40.0 30.0 41.0 23 36.19329158982546 38.0 34.0 40.0 30.0 41.0 24 36.04235731307037 38.0 34.0 40.0 30.0 41.0 25 35.89303665201484 38.0 34.0 40.0 30.0 41.0 26 35.85736199782501 38.0 34.0 40.0 30.0 41.0 27 35.84163429596953 38.0 34.0 40.0 30.0 41.0 28 35.8581515721165 38.0 34.0 40.0 30.0 41.0 29 35.87331987663149 38.0 34.0 40.0 30.0 41.0 30 35.780776064766485 38.0 34.0 40.0 29.0 41.0 31 35.64307636843367 38.0 34.0 40.0 29.0 41.0 32 35.484021322071435 37.0 34.0 40.0 29.0 41.0 33 35.378200143018724 37.0 34.0 40.0 27.0 41.0 34 35.22891434525354 37.0 34.0 40.0 27.0 41.0 35 35.07255803450277 37.0 34.0 40.0 26.0 41.0 36 34.89460233069019 37.0 34.0 40.0 25.0 41.0 37 34.83217208203174 37.0 33.0 40.0 25.0 41.0 38 34.74611640773411 37.0 33.0 40.0 25.0 41.0 39 34.69900104787958 37.0 33.0 40.0 25.0 41.0 40 34.56938091908349 37.0 33.0 40.0 24.0 41.0 41 34.50882734549719 37.0 33.0 40.0 24.0 41.0 42 34.44401173466659 36.0 33.0 40.0 24.0 41.0 43 34.344205661719116 36.0 33.0 40.0 24.0 41.0 44 34.20591527031926 36.0 33.0 40.0 23.0 41.0 45 34.10186261090389 36.0 33.0 40.0 23.0 41.0 46 34.00028841449283 36.0 33.0 40.0 23.0 41.0 47 33.957393889812195 36.0 33.0 40.0 23.0 41.0 48 33.833533335050085 35.0 33.0 40.0 23.0 41.0 49 33.7227068967908 36.0 33.0 40.0 23.0 41.0 50 33.58379807816112 35.0 32.0 39.0 23.0 41.0 51 33.220747223317204 35.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 3.0 12 1.0 13 17.0 14 35.0 15 92.0 16 277.0 17 582.0 18 1361.0 19 2704.0 20 4626.0 21 7389.0 22 11248.0 23 16372.0 24 22970.0 25 31101.0 26 41239.0 27 49792.0 28 56983.0 29 65322.0 30 77698.0 31 93519.0 32 115752.0 33 145687.0 34 227107.0 35 289012.0 36 201358.0 37 247872.0 38 341398.0 39 472538.0 40 87.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.747779941326666 23.974177394721778 30.053582500212944 14.22446016373861 2 30.499317590708934 25.83013257954674 30.26755594468622 13.402993885058109 3 28.984586860105104 25.25881040906921 31.668545190549676 14.088057540276013 4 25.205287334919348 28.59356336502063 31.304540745480153 14.896608554579869 5 23.27092936420055 32.85932464260175 29.733949515578544 14.135796477619152 6 22.34780490027316 40.85054543221566 26.573156454958013 10.228493212553163 7 88.86668555094893 3.3027817340129038 6.3214276517395005 1.5091050632986613 8 89.58118491608049 2.44569943485814 5.978024241872 1.995091407189365 9 84.56677409578293 5.019481844347294 7.730261137929874 2.6834829219399046 10 43.81344970277064 30.787018970780206 14.077519318422674 11.32201200802648 11 37.589718498739174 21.798866546890135 24.456637792202905 16.154777162167782 12 33.99824495027029 21.139673037800918 27.55994604113472 17.302135970794073 13 24.243773634240505 29.526235616416646 28.17025170899453 18.059739040348315 14 19.06368295006824 32.51845674475911 30.15528030283522 18.262580002337426 15 17.791252087340464 25.565171572948465 39.66111297092679 16.98246336878428 16 22.25969585740914 22.844289848641814 37.70029059344848 17.195723700500565 17 22.27926684085106 23.127395613168023 28.759679020024603 25.833658525956317 18 24.038119838598814 24.563446236250293 31.95791050038726 19.440523424763633 19 27.446244173769728 26.089269831962902 27.426078929696985 19.03840706457038 20 29.398667667665684 25.883101010441163 26.43037543405787 18.287855887835285 21 25.557525419498482 26.62101424442732 29.44886288228291 18.372597453791283 22 24.536902594740003 23.32029261393462 29.111203991846747 23.031600799478635 23 21.74724510675892 26.8449712674985 28.855751155341707 22.552032470400867 24 21.751404931174715 24.77646886371425 34.64701908963233 18.825107115478705 25 21.164750836421838 25.92687821024545 31.851617082219917 21.056753871112793 26 20.02856412765511 30.958760293089345 27.85359002751427 21.15908555174128 27 19.736861392669596 30.3213563404638 30.15171473905025 19.790067527816348 28 18.383650701524676 27.908737414055057 34.55609721311573 19.15151467130454 29 19.94112858017269 25.89403540604838 33.44807845825022 20.7167575555287 30 21.354676534034297 27.918602140526794 30.991444627784855 19.735276697654058 31 27.112230081869303 25.915349554007395 27.124511468239742 19.847908895883556 32 27.16801134641631 26.31706974044676 28.104249161597295 18.41066975153963 33 26.117081229485628 25.997714077440083 27.63577369762831 20.249430995445984 34 21.15500496207627 26.962634872402337 29.78077725328775 22.101582912233646 35 20.81706875001238 27.283614847799946 30.129172452454196 21.770143949733477 36 25.70850723710405 26.33822541890422 28.6071125074035 19.34615483658823 37 21.965101054020273 29.77118984844373 28.354829060929543 19.908880036606455 38 21.757149450606047 30.346236052207775 25.6246372534066 22.271977243779578 39 21.375871829867144 29.09210841690949 27.872962924079243 21.659056829144127 40 23.668053935094854 25.680973161209042 27.586767004272733 23.064205899423367 41 19.69046944608967 25.298823958211592 28.395119931699647 26.615586663999096 42 21.63489023015714 26.29199194182585 27.328897507868998 24.74422032014801 43 21.474717181461443 25.687232706520426 28.596851607177875 24.241198504840252 44 20.78466173694459 27.45080017193941 29.23611757644668 22.52842051466932 45 20.03474443821571 30.624270792684253 27.112031994992364 22.22895277410767 46 22.39118592632357 28.820610543372112 27.65019442226972 21.138009108034602 47 20.847613746436913 27.4563466044938 28.95859786185025 22.73744178721904 48 22.100632095224324 25.397590075055117 30.932850529585266 21.568927300135293 49 22.115448993619623 24.51634117691337 31.089378779745218 22.278831049721788 50 20.552900090921877 28.591899435254316 28.587264202333863 22.267936271489948 51 19.371311869959925 29.59532831909419 27.703915583296524 23.32944422764936 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1200.0 1 2300.5 2 3401.0 3 13425.0 4 23449.0 5 16748.0 6 10047.0 7 10136.5 8 10226.0 9 10929.0 10 11632.0 11 12242.5 12 12853.0 13 12403.5 14 11954.0 15 11583.5 16 11213.0 17 10620.0 18 10027.0 19 10178.0 20 10329.0 21 10705.0 22 11081.0 23 11882.0 24 12683.0 25 16076.5 26 22152.0 27 24834.0 28 30281.5 29 35729.0 30 39189.5 31 42650.0 32 51134.0 33 59618.0 34 65282.0 35 70946.0 36 76632.5 37 82319.0 38 94840.5 39 107362.0 40 127550.5 41 147739.0 42 170599.5 43 193460.0 44 200652.0 45 207844.0 46 212312.0 47 216780.0 48 210532.5 49 204285.0 50 194844.0 51 185403.0 52 171493.5 53 157584.0 54 142682.5 55 127781.0 56 119086.5 57 110392.0 58 104868.0 59 99344.0 60 91741.0 61 84138.0 62 75307.0 63 66476.0 64 57080.5 65 47685.0 66 40161.5 67 32638.0 68 27493.0 69 22348.0 70 18625.0 71 14902.0 72 12266.5 73 9631.0 74 8197.5 75 5000.5 76 3237.0 77 2269.0 78 1301.0 79 1047.0 80 793.0 81 571.0 82 349.0 83 232.0 84 115.0 85 87.0 86 59.0 87 39.0 88 19.0 89 21.5 90 24.0 91 19.0 92 14.0 93 12.5 94 11.0 95 8.5 96 6.0 97 3.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2524145.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.68408944480393 #Duplication Level Percentage of deduplicated Percentage of total 1 81.2132558940999 17.610355049114123 2 7.27094432173739 3.153276140414856 3 2.230268285049286 1.4508401093675456 4 1.140223923426961 0.9889887017078196 5 0.6367796633610491 0.6903993588476561 6 0.4603160092462707 0.5988920110422796 7 0.36639321577557044 0.5561432283992771 8 0.27694023732610373 0.48041575016355687 9 0.220264750034371 0.42986164871544114 >10 3.5256025560255213 20.017667553735656 >50 1.7818162019724642 27.578911090205203 >100 0.8731474882082692 25.248965093569915 >500 0.0036795033971731925 0.5109937970347813 >1k 1.8397516985865962E-4 0.1522329869220646 >5k 0.0 0.0 >10k+ 1.8397516985865962E-4 0.5320574807598468 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13337 0.5283769355563963 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3816 0.15117990448250793 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.9617375388497885E-5 0.0 0.0 0.03890426263150493 0.0 2 3.9617375388497885E-5 0.0 0.0 0.12637942748930825 0.0 3 3.9617375388497885E-5 0.0 0.0 0.20208823185672772 0.0 4 3.9617375388497885E-5 0.0 0.0 0.35342660584078966 0.0 5 3.9617375388497885E-5 0.0 0.0 0.6010352020189015 0.0 6 3.9617375388497885E-5 0.0 0.0 1.032270333122701 0.0 7 3.9617375388497885E-5 0.0 0.0 1.2440648219496107 0.0 8 3.9617375388497885E-5 0.0 0.0 1.781910310223858 0.0 9 3.9617375388497885E-5 0.0 0.0 2.0054711595411514 0.0 10 3.9617375388497885E-5 0.0 0.0 2.3381778780537568 0.0 11 3.9617375388497885E-5 0.0 0.0 2.704876304649693 0.0 12 3.9617375388497885E-5 0.0 0.0 3.005255244845284 0.0 13 3.9617375388497885E-5 0.0 0.0 3.1409447555508896 0.0 14 3.9617375388497885E-5 0.0 0.0 3.2025893916553922 0.0 15 3.9617375388497885E-5 0.0 0.0 3.277703935391984 0.0 16 3.9617375388497885E-5 0.0 0.0 3.4318551430286295 0.0 17 3.9617375388497885E-5 0.0 0.0 3.613580043935669 0.0 18 3.9617375388497885E-5 0.0 0.0 3.825849941267241 0.0 19 3.9617375388497885E-5 0.0 0.0 3.954725263406025 0.0 20 3.9617375388497885E-5 0.0 0.0 4.099447535700207 0.0 21 3.9617375388497885E-5 0.0 0.0 4.275586386677469 0.0 22 3.9617375388497885E-5 0.0 0.0 4.469592673954943 0.0 23 3.9617375388497885E-5 0.0 0.0 4.667798403023598 0.0 24 3.9617375388497885E-5 0.0 0.0 4.824564357435884 0.0 25 3.9617375388497885E-5 0.0 0.0 4.9617989457816405 0.0 26 3.9617375388497885E-5 0.0 0.0 5.090040389914209 0.0 27 3.9617375388497885E-5 0.0 0.0 5.222085102084072 0.0 28 3.9617375388497885E-5 0.0 0.0 5.358685812423612 0.0 29 3.9617375388497885E-5 0.0 0.0 5.518462687365425 0.0 30 3.9617375388497885E-5 0.0 0.0 5.709061880359488 0.0 31 3.9617375388497885E-5 0.0 0.0 5.874781361609575 0.0 32 3.9617375388497885E-5 0.0 0.0 6.040381990733496 0.0 33 3.9617375388497885E-5 0.0 0.0 6.202813229826337 0.0 34 3.9617375388497885E-5 0.0 0.0 6.383191139970168 0.0 35 3.9617375388497885E-5 0.0 0.0 6.581793042792708 0.0 36 3.9617375388497885E-5 0.0 0.0 6.76082396217333 0.0 37 3.9617375388497885E-5 0.0 0.0 6.944767436102126 0.0 38 3.9617375388497885E-5 0.0 0.0 7.157671211439913 0.0 39 3.9617375388497885E-5 0.0 0.0 7.438003759688924 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 8185 0.0 41.94869 1 TACGGGA 1020 0.0 39.92647 4 GCGATAA 205 0.0 39.512196 9 GGGCGAT 3560 0.0 39.058987 7 CGGGTAT 145 0.0 38.793106 6 TAGGGAC 2295 0.0 38.725487 5 CGAGGGT 315 0.0 38.571426 4 TAGGGCG 875 0.0 38.314285 5 ACGGGTA 215 0.0 37.67442 5 GGCGATA 825 0.0 37.636364 8 CGTTCGA 30 1.1403086E-4 37.500004 14 CCGGTTA 30 1.1403086E-4 37.500004 11 ACGGGAT 1095 0.0 37.19178 5 CGTAAGG 485 0.0 37.113403 2 CGGTAGT 310 0.0 37.01613 12 TAAGACG 225 0.0 37.000004 1 ACTATCG 55 2.752131E-9 36.818184 11 CGTTAGG 385 0.0 36.81818 2 CTACGGG 540 0.0 36.666668 3 ACGTAGG 395 0.0 36.455696 2 >>END_MODULE