##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548179_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2427637 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.077547425747753 31.0 31.0 33.0 30.0 34.0 2 31.461698763035823 31.0 31.0 34.0 30.0 34.0 3 31.58036395062359 31.0 31.0 34.0 30.0 34.0 4 35.387464435580775 37.0 35.0 37.0 33.0 37.0 5 35.23705273893914 37.0 35.0 37.0 33.0 37.0 6 35.27568413234763 37.0 35.0 37.0 32.0 37.0 7 35.717012469327166 37.0 35.0 37.0 35.0 37.0 8 35.7058991933308 37.0 35.0 37.0 35.0 37.0 9 37.41534298579236 39.0 37.0 39.0 35.0 39.0 10 36.6901385997989 39.0 37.0 39.0 32.0 39.0 11 36.3814940207288 38.0 35.0 39.0 32.0 39.0 12 35.738321668354864 37.0 35.0 39.0 31.0 39.0 13 35.4477110869541 37.0 35.0 39.0 30.0 39.0 14 36.3645804541618 38.0 35.0 40.0 30.0 41.0 15 36.64791070493653 38.0 35.0 40.0 31.0 41.0 16 36.765519309517856 38.0 35.0 40.0 31.0 41.0 17 36.62841973491094 38.0 35.0 40.0 31.0 41.0 18 36.568020260030636 38.0 35.0 40.0 31.0 41.0 19 36.4928970023113 38.0 35.0 40.0 31.0 41.0 20 36.38165673039256 38.0 35.0 40.0 30.0 41.0 21 36.2245026748233 38.0 34.0 40.0 30.0 41.0 22 36.148838973866354 38.0 34.0 40.0 30.0 41.0 23 36.10393769743994 38.0 34.0 40.0 30.0 41.0 24 35.92127529774839 38.0 34.0 40.0 30.0 41.0 25 35.78963041014781 37.0 34.0 40.0 29.0 41.0 26 35.71093660213615 37.0 34.0 40.0 29.0 41.0 27 35.70045892363644 37.0 34.0 40.0 29.0 41.0 28 35.72378448672516 37.0 34.0 40.0 29.0 41.0 29 35.76798055063422 37.0 34.0 40.0 29.0 41.0 30 35.69669147405481 37.0 34.0 40.0 29.0 41.0 31 35.572563360996725 37.0 34.0 40.0 29.0 41.0 32 35.43016274673685 37.0 34.0 40.0 29.0 41.0 33 35.31694895076982 37.0 34.0 40.0 27.0 41.0 34 35.17278118598456 37.0 34.0 40.0 27.0 41.0 35 35.02981252963273 37.0 34.0 40.0 26.0 41.0 36 34.83730804893813 37.0 33.0 40.0 25.0 41.0 37 34.76519306634394 37.0 33.0 40.0 25.0 41.0 38 34.683544121299846 37.0 33.0 40.0 25.0 41.0 39 34.64153619342595 37.0 33.0 40.0 24.0 41.0 40 34.50414868450267 37.0 33.0 40.0 24.0 41.0 41 34.44028781897788 36.0 33.0 40.0 24.0 41.0 42 34.39004348673216 36.0 33.0 40.0 24.0 41.0 43 34.28507927667934 36.0 33.0 40.0 24.0 41.0 44 34.148548156087585 36.0 33.0 40.0 23.0 41.0 45 34.06426537410659 36.0 33.0 40.0 23.0 41.0 46 33.95290770407602 36.0 33.0 40.0 23.0 41.0 47 33.9046270097218 35.0 33.0 40.0 23.0 41.0 48 33.8011329535676 35.0 33.0 40.0 23.0 41.0 49 33.69439129490941 36.0 32.0 40.0 23.0 41.0 50 33.538837972892985 35.0 32.0 39.0 23.0 41.0 51 33.17158125370474 35.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 5.0 12 11.0 13 9.0 14 37.0 15 86.0 16 289.0 17 663.0 18 1467.0 19 2776.0 20 4779.0 21 7721.0 22 11633.0 23 16458.0 24 22432.0 25 30868.0 26 40919.0 27 48893.0 28 55617.0 29 64248.0 30 75866.0 31 92453.0 32 113119.0 33 142344.0 34 219400.0 35 282656.0 36 192601.0 37 233399.0 38 323312.0 39 443510.0 40 63.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.19132967572994 24.222773009309055 29.039844095307494 13.546053219653514 2 30.228324910190445 25.920390898639294 29.876171767031067 13.975112424139194 3 29.242592694047755 25.186796872843843 31.55957830598232 14.011032127126091 4 25.794301207305704 28.830793071616554 30.407017194086265 14.967888526991475 5 23.305337659625387 32.39005666827454 29.86286664769074 14.441739024409333 6 22.541467278674695 40.656819779892956 26.57003497639886 10.231677965033487 7 88.36926608055488 3.884724116496824 6.122867628067953 1.6231421748803467 8 89.07942167630497 2.9850426567069133 6.002009361366629 1.9335263056214747 9 83.71684069735302 5.661513644750018 7.805944628459692 2.8157010294372675 10 43.57558399381786 31.374130481616486 13.716754193481151 11.333531331084508 11 37.9654371720319 22.682592166786055 24.17012922442688 15.181841436755168 12 34.32016401134107 22.16987136050406 26.82868155329648 16.681283074858392 13 24.17704953417665 31.30657507691636 27.625382213238638 16.890993175668356 14 18.552608977371822 34.92997511571952 28.913342480774514 17.604073426134136 15 17.28170233029073 25.534089322250402 40.6968999071937 16.487308440265164 16 20.791164412142344 23.16413038687415 38.7315319382593 17.313173262724206 17 21.5402467502349 22.578169635740434 28.577954611830354 27.303629002194313 18 22.92710977794456 24.651502675235218 32.88794823937845 19.533439307441764 19 27.0283407280413 26.251165227750278 27.160238536486304 19.56025550772212 20 29.126759890379 25.443754564623955 27.089140592271416 18.340344952725633 21 24.65277963715333 27.039091923545406 29.612746881020513 18.69538155828075 22 24.366287051976883 23.32276201095963 28.891386974246974 23.419563962816518 23 21.4183586755351 27.924108917436996 28.046697261575765 22.61083514545214 24 20.9058438308528 25.2272065387041 34.83061924002641 19.03633039041669 25 20.27481868170571 26.469690485027208 32.477260809585616 20.778230023681466 26 19.71740420828979 31.883844248542925 27.682763114913804 20.715988428253482 27 19.198710515616625 31.592285008013967 29.797823974506898 19.41118050186251 28 17.9696964579136 28.00608163411581 34.67969057976955 19.344531328201047 29 19.075586671318653 25.414425632827314 33.94457243813635 21.56541525771769 30 19.945032968273264 28.529141712702515 31.400493566377506 20.125331752646712 31 25.62681323443332 26.297506587681767 28.081175233364792 19.994504944520124 32 26.738346795670026 26.39546192449695 28.117630436510893 18.748560843322128 33 25.500970697019365 27.05490977440202 27.22009097735782 20.224028551220798 34 20.079484700554488 27.194181008116125 29.450037217261066 23.27629707406832 35 20.214307163715166 27.042387309140537 30.921303308525943 21.82200221861835 36 26.24778745751527 26.070660481777136 28.367049933742155 19.31450212696544 37 21.188340760995157 29.933593861026175 29.594951798806825 19.283113579171847 38 20.869429820026635 30.709492399399085 26.360736798788288 22.06034098178599 39 21.024807250836925 29.394468777663217 28.517690247759447 21.06303372374041 40 23.293721425402563 26.521551615830536 27.59535301200303 22.589373946763867 41 19.14219465266018 25.87936334797995 29.42775217217401 25.550689827185863 42 21.887374430361707 26.39410257793896 27.209916474332857 24.508606517366477 43 21.98162245838237 26.143735657349097 28.260938517579028 23.6137033666895 44 19.92946227133628 28.415368525030722 29.295936748368888 22.35923245526411 45 19.381604416146235 32.25016754976136 26.05035266804716 22.317875366045254 46 22.129544079283683 29.980141182557357 27.363934558585157 20.5263801795738 47 20.950125574787336 27.164934460959362 28.9249175226774 22.9600224415759 48 21.758195315032683 26.160377354604496 30.860297482696136 21.22112984766668 49 21.6064016160571 25.181071140372303 30.955698895675095 22.256828347895503 50 20.295044110795807 29.768577427350134 28.531036559419714 21.405341902434344 51 19.35528252370515 30.530264615344056 27.51803502747734 22.596417833473456 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1475.0 1 2316.0 2 3157.0 3 11620.5 4 20084.0 5 14491.0 6 8898.0 7 9078.5 8 9259.0 9 10178.5 10 11098.0 11 11396.0 12 11694.0 13 11831.5 14 11969.0 15 11020.5 16 10072.0 17 9637.5 18 9203.0 19 9566.5 20 9930.0 21 10511.5 22 11093.0 23 12026.0 24 12959.0 25 15973.0 26 20575.5 27 22164.0 28 26634.5 29 31105.0 30 37537.0 31 43969.0 32 52061.5 33 60154.0 34 64896.0 35 69638.0 36 79552.5 37 89467.0 38 98546.0 39 107625.0 40 129806.5 41 151988.0 42 179265.5 43 206543.0 44 212557.0 45 218571.0 46 212043.5 47 205516.0 48 203744.0 49 201972.0 50 190449.0 51 178926.0 52 163128.5 53 147331.0 54 134079.5 55 120828.0 56 110590.5 57 100353.0 58 92729.0 59 85105.0 60 78522.0 61 71939.0 62 61574.0 63 51209.0 64 44727.0 65 38245.0 66 33801.5 67 29358.0 68 23641.0 69 17924.0 70 14964.0 71 12004.0 72 9520.0 73 7036.0 74 5722.0 75 3140.0 76 1872.0 77 1564.5 78 1257.0 79 992.5 80 728.0 81 526.0 82 324.0 83 215.0 84 106.0 85 80.5 86 55.0 87 32.5 88 10.0 89 12.0 90 14.0 91 12.0 92 10.0 93 7.0 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2427637.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.99422234839405 #Duplication Level Percentage of deduplicated Percentage of total 1 81.71434944669045 17.155292213381898 2 7.122299970257699 2.99054298415101 3 2.1750446089098463 1.3699011041138727 4 1.066225541043129 0.8953830432878479 5 0.6200392700785735 0.6508621150382762 6 0.43375215414434753 0.5463773500920794 7 0.32166659500779227 0.4727198012351087 8 0.25228224570904734 0.42371756487743373 9 0.20908321920713463 0.39505856340173384 >10 3.2628047204346236 17.907728548260057 >50 1.8057681738236953 27.163917027011227 >100 1.0139148770276276 29.07709207181883 >500 0.0023735808565862526 0.3308395292831334 >1k 1.9779840471552106E-4 0.13060001501135368 >5k 0.0 0.0 >10k+ 1.9779840471552106E-4 0.48996806903623585 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11799 0.48602818296145595 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3145 0.1295498462084735 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.235769598173038E-4 0.0 0.0 0.037649780424338565 0.0 2 1.235769598173038E-4 0.0 0.0 0.1262956529332845 0.0 3 1.235769598173038E-4 0.0 0.0 0.18812532516187552 0.0 4 1.235769598173038E-4 0.0 0.0 0.31059009234082363 0.0 5 1.235769598173038E-4 0.0 0.0 0.5432855076768067 0.0 6 1.235769598173038E-4 0.0 0.0 0.8779319148620655 0.0 7 1.235769598173038E-4 0.0 0.0 1.0506925046866562 0.0 8 1.235769598173038E-4 0.0 0.0 1.4933451747522386 0.0 9 1.235769598173038E-4 0.0 0.0 1.6472396820447208 0.0 10 1.235769598173038E-4 0.0 0.0 1.912435837812655 0.0 11 1.235769598173038E-4 0.0 0.0 2.2273923160670233 0.0 12 1.235769598173038E-4 0.0 0.0 2.4841440462474416 0.0 13 1.235769598173038E-4 0.0 0.0 2.600306388475707 0.0 14 1.235769598173038E-4 0.0 0.0 2.6489957106437245 0.0 15 1.235769598173038E-4 0.0 0.0 2.7146974609465913 0.0 16 1.235769598173038E-4 0.0 0.0 2.8636900821663205 0.0 17 1.235769598173038E-4 0.0 0.0 3.028088631043274 0.0 18 1.235769598173038E-4 0.0 0.0 3.2289011907463925 0.0 19 1.235769598173038E-4 0.0 0.0 3.345722610093684 0.0 20 1.235769598173038E-4 0.0 0.0 3.46917599295117 0.0 21 1.235769598173038E-4 0.0 0.0 3.635798927104835 0.0 22 1.235769598173038E-4 0.0 0.0 3.8079828244502782 0.0 23 1.235769598173038E-4 0.0 0.0 3.9965200728115446 0.0 24 1.235769598173038E-4 0.0 0.0 4.141723000596877 0.0 25 1.235769598173038E-4 0.0 0.0 4.26624738377278 0.0 26 1.235769598173038E-4 0.0 0.0 4.386982073514286 0.0 27 1.235769598173038E-4 0.0 0.0 4.509529225333112 0.0 28 1.235769598173038E-4 0.0 0.0 4.643074726575678 0.0 29 1.235769598173038E-4 0.0 0.0 4.785888499804543 0.0 30 1.235769598173038E-4 0.0 0.0 4.964869129939937 0.0 31 1.235769598173038E-4 0.0 0.0 5.1261782548214585 0.0 32 1.235769598173038E-4 0.0 0.0 5.270227797648495 0.0 33 1.235769598173038E-4 0.0 0.0 5.423216073902317 0.0 34 1.235769598173038E-4 0.0 0.0 5.572661810641377 0.0 35 1.235769598173038E-4 0.0 0.0 5.760539981883618 0.0 36 1.235769598173038E-4 0.0 0.0 5.927080531397404 0.0 37 1.235769598173038E-4 0.0 0.0 6.104578238014992 0.0 38 1.235769598173038E-4 0.0 0.0 6.2882547926234444 0.0 39 1.235769598173038E-4 0.0 0.0 6.518313899483324 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 7685 0.0 41.310997 1 TCGTAAT 50 1.0822987E-9 40.5 28 TCACGAC 235 0.0 40.212765 25 GGGCGAT 3810 0.0 39.980316 7 CGACCCG 210 0.0 39.642853 32 GCGATAA 205 0.0 39.51219 9 ACGGGAT 825 0.0 39.272728 5 GCGATAT 275 0.0 39.272728 9 CGAAAGG 475 0.0 38.842106 2 TACGGGA 995 0.0 38.668343 4 GGCGATA 890 0.0 38.174156 8 CTTAACG 65 9.094947E-12 38.07692 1 TACGCAA 30 1.1402959E-4 37.499996 28 CGCTTAA 30 1.1402959E-4 37.499996 40 AGGGCGA 1985 0.0 37.292194 6 ACCGTTC 85 0.0 37.058826 43 TAAGGGA 3235 0.0 36.93199 4 CGAACGG 195 0.0 36.923077 2 CACGACG 250 0.0 36.899998 26 TATCGGA 55 2.752131E-9 36.818184 37 >>END_MODULE