SRR1548177_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548177_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	926780
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8065	0.8702173115518247	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4802	0.5181380694447442	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGCGG	45	3.8380676E-10	45.000004	2
TATCGTG	45	3.8380676E-10	45.000004	1
CGGGTAG	20	7.032579E-4	45.0	6
CGTGGCT	20	7.032579E-4	45.0	22
CTGTCGT	40	6.8121153E-9	45.0	37
ACACGAA	20	7.032579E-4	45.0	36
GTCGACC	25	3.8902188E-5	45.0	15
CGAGTCA	20	7.032579E-4	45.0	14
GGTCGAC	25	3.8902188E-5	45.0	14
CCCTAGT	25	3.8902188E-5	45.0	35
AACCCGT	25	3.8902188E-5	45.0	37
CGGTTGC	20	7.032579E-4	45.0	31
CGTGACG	25	3.8902188E-5	45.0	19
GGCGTGT	25	3.8902188E-5	45.0	8
GACCGTA	25	3.8902188E-5	45.0	26
GAGTACG	55	1.8189894E-12	45.0	1
ATTACGC	25	3.8902188E-5	45.0	28
TTGTCGA	40	6.8121153E-9	45.0	1
CAACCCG	25	3.8902188E-5	45.0	1
ACTTCGT	25	3.8902188E-5	45.0	37