##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548177_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 926780 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.13713934267032 31.0 31.0 33.0 30.0 34.0 2 31.503839098815252 31.0 31.0 34.0 30.0 34.0 3 31.55893308012689 31.0 31.0 34.0 30.0 34.0 4 35.38211981268478 37.0 35.0 37.0 33.0 37.0 5 35.23455620535618 37.0 35.0 37.0 33.0 37.0 6 35.290274930404195 37.0 35.0 37.0 32.0 37.0 7 35.760524612097804 37.0 35.0 37.0 35.0 37.0 8 35.77858067718336 37.0 35.0 37.0 35.0 37.0 9 37.568781156261466 39.0 37.0 39.0 35.0 39.0 10 36.81459569692915 39.0 37.0 39.0 32.0 39.0 11 36.40630462461426 38.0 35.0 39.0 32.0 39.0 12 35.08700554608429 35.0 35.0 39.0 30.0 39.0 13 34.3904907313494 35.0 33.0 39.0 25.0 39.0 14 35.17326981592179 36.0 33.0 40.0 25.0 41.0 15 35.73444398886467 36.0 33.0 40.0 30.0 41.0 16 36.04902889574657 36.0 34.0 40.0 31.0 41.0 17 35.97875115993008 36.0 34.0 40.0 31.0 41.0 18 35.925436457411685 36.0 35.0 40.0 31.0 41.0 19 35.78504283648763 36.0 34.0 40.0 30.0 41.0 20 35.56474136256717 35.0 34.0 40.0 30.0 41.0 21 35.35016400871836 35.0 34.0 40.0 30.0 41.0 22 35.2309480135523 35.0 34.0 40.0 29.0 41.0 23 35.298117136753056 35.0 34.0 40.0 30.0 41.0 24 35.1094100002158 35.0 34.0 39.0 29.0 41.0 25 34.97391506074796 35.0 34.0 39.0 29.0 41.0 26 34.86689937201925 35.0 34.0 39.0 29.0 41.0 27 34.805651826755 35.0 34.0 39.0 29.0 41.0 28 34.915031614838476 35.0 34.0 39.0 29.0 41.0 29 35.04437514836315 35.0 34.0 39.0 29.0 41.0 30 35.028458749649324 36.0 34.0 39.0 29.0 41.0 31 34.771008222016015 35.0 34.0 39.0 29.0 41.0 32 34.51137270981247 35.0 33.0 39.0 27.0 41.0 33 34.35715056431947 35.0 33.0 39.0 27.0 41.0 34 34.24071300632297 35.0 34.0 39.0 26.0 41.0 35 34.06761367314789 35.0 33.0 39.0 25.0 41.0 36 33.74814303286649 35.0 33.0 39.0 23.0 41.0 37 33.63443859384104 35.0 33.0 39.0 23.0 41.0 38 33.605349705431706 35.0 33.0 39.0 23.0 41.0 39 33.65597013314918 35.0 33.0 39.0 23.0 41.0 40 33.46621528302294 35.0 33.0 39.0 23.0 41.0 41 33.49513584669501 35.0 33.0 39.0 23.0 41.0 42 33.45024601307754 35.0 33.0 39.0 23.0 41.0 43 33.30462461425581 35.0 33.0 39.0 23.0 41.0 44 33.155045426098965 35.0 32.0 38.0 23.0 41.0 45 33.02744448520684 35.0 32.0 38.0 23.0 40.0 46 32.94926627678629 35.0 32.0 38.0 23.0 40.0 47 32.934153736593366 35.0 32.0 38.0 23.0 40.0 48 32.88415265758864 35.0 32.0 38.0 23.0 40.0 49 32.86315090960098 35.0 32.0 38.0 22.0 40.0 50 32.663246941021605 35.0 32.0 38.0 21.0 40.0 51 32.28752238934806 35.0 31.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 1.0 14 11.0 15 25.0 16 90.0 17 249.0 18 618.0 19 1152.0 20 2014.0 21 3305.0 22 5043.0 23 7130.0 24 10260.0 25 14242.0 26 18700.0 27 22102.0 28 24129.0 29 27346.0 30 32084.0 31 38930.0 32 48881.0 33 63651.0 34 112784.0 35 163129.0 36 60160.0 37 65580.0 38 86227.0 39 118903.0 40 32.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.693778458749648 24.93979153628693 30.9623643151557 14.404065689807721 2 29.32529834480675 26.565420056539846 31.40270614385291 12.706575454800491 3 27.48796909730465 25.39189451649798 33.965666069617384 13.154470316579985 4 23.648654481106625 28.553594164742442 33.53589848723537 14.261852866915556 5 22.570620859319362 32.070717969744706 32.3887006625089 12.969960508427029 6 20.07132221239129 41.8744470100779 27.958846759748806 10.095384017782 7 87.0361898185114 4.227432616154859 7.246056237726322 1.490321327607415 8 89.07669565592697 2.6567254364574118 6.430436565312156 1.836142342303459 9 86.51416733205292 3.654589007099851 8.001467446427416 1.829776214419819 10 57.219189020047914 19.676514383132996 13.112604933209607 9.991691663609487 11 51.615485875828135 19.79801031528518 18.427458512268284 10.1590452966184 12 47.273031355877336 20.886726083860246 21.19219232180237 10.648050238460044 13 19.79747081292216 47.41880489436544 21.92947625110598 10.854248041606422 14 12.001122164915081 49.65374738341354 26.353719329290666 11.991411122380716 15 10.474114676622284 24.586633289453808 53.52564794233798 11.413604091585922 16 11.94749563003086 18.058115194544552 53.80262845551263 16.191760719911954 17 12.878892509549193 18.497270118043115 28.60916290813354 40.01467446427415 18 20.11577720710417 24.819158807915578 36.38889488335959 18.676169101620665 19 28.779645654847968 26.56790176740974 25.589783983253845 19.062668594488443 20 31.215606724357453 23.60107037268823 25.167677334426724 20.01564556852759 21 19.13096959364682 30.102397548501266 30.036254558794965 20.73037829905695 22 21.16780681499385 24.8038369408058 27.288029521569307 26.740326722631046 23 16.787155527741213 33.43371673967932 24.484775243315564 25.294352489263904 24 18.673903191695977 23.718789788299272 41.91221217548933 15.69509484451542 25 14.42122186495177 25.49439996547185 39.214592459914975 20.86978570966141 26 13.318047433047756 39.1277325794687 27.709380867088196 19.844839120395346 27 14.344180927512461 39.30156024083386 30.236625736420724 16.117633095232957 28 11.26588834459095 31.53704223224498 43.05779149312674 14.139277930037334 29 11.332894538078078 26.012322233971386 42.48354517792788 20.17123805002266 30 15.654740067761496 34.3133213923477 33.62362157146248 16.40831696842832 31 29.559010768467164 29.227756317572673 24.63702281015991 16.576210103800253 32 29.42521418243812 29.595804829625155 25.70728759791968 15.271693390017049 33 26.24398454865232 30.43192559183409 24.15718940848961 19.166900451023974 34 16.41468309631196 31.605774833293772 27.753943762273682 24.22559830812059 35 16.621636202766567 28.894775459116513 31.755648589740826 22.727939748376098 36 30.92503075163469 25.454476790608343 27.215196702561556 16.405295755195407 37 17.18681887826669 34.78894667558644 31.144176611493556 16.880057834653318 38 17.387190055892447 35.12926476617967 24.008934159131616 23.474611018796264 39 17.478365955242882 33.64617277023673 29.08392498759145 19.791536286928938 40 22.60180409590194 27.693951099505814 25.871512117223073 23.83273268736917 41 14.644899544660007 24.6182481279268 28.90103368652755 31.83581864088565 42 21.38360776020199 25.613090485336325 25.30438723321608 27.698914521245605 43 22.10470661861499 26.91242797643454 26.023435982649605 24.959429422300868 44 17.44750642007812 33.77435853169037 28.219210600142432 20.558924448089083 45 14.718919268866399 43.14033535466885 20.807203435551045 21.3335419409137 46 22.229115863527483 36.28013120697469 24.46664796391808 17.02410496557975 47 20.65376896350806 30.783033729687737 25.5487818036643 23.014415503139904 48 21.97608925527094 25.989771035197133 31.200069056302464 20.83407065322946 49 20.27072228576361 24.344504628930274 33.09231964436004 22.292453440946073 50 17.706143852910074 35.80655603271543 27.66276786292324 18.824532251451263 51 16.61505427393772 36.874231209132695 23.579490278167416 22.931224238762166 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 892.0 1 981.0 2 1070.0 3 5717.5 4 10365.0 5 7066.0 6 3767.0 7 4308.0 8 4849.0 9 5695.0 10 6541.0 11 7338.5 12 8136.0 13 8065.5 14 7995.0 15 7753.5 16 7512.0 17 7107.0 18 6702.0 19 6061.5 20 5421.0 21 5658.5 22 5896.0 23 5484.5 24 5073.0 25 5114.0 26 6109.5 27 7064.0 28 7852.0 29 8640.0 30 11091.5 31 13543.0 32 15364.0 33 17185.0 34 18891.0 35 20597.0 36 22395.0 37 24193.0 38 31176.0 39 38159.0 40 58815.0 41 79471.0 42 95386.0 43 111301.0 44 113280.5 45 115260.0 46 107953.5 47 100647.0 48 92547.0 49 84447.0 50 78227.0 51 72007.0 52 60744.5 53 49482.0 54 42039.5 55 34597.0 56 28921.0 57 23245.0 58 20246.0 59 17247.0 60 14704.5 61 12162.0 62 9686.0 63 7210.0 64 5843.5 65 4477.0 66 3684.5 67 2892.0 68 2180.0 69 1468.0 70 1176.5 71 885.0 72 649.5 73 414.0 74 362.0 75 250.5 76 191.0 77 181.0 78 171.0 79 122.5 80 74.0 81 52.0 82 30.0 83 22.0 84 14.0 85 15.0 86 16.0 87 10.0 88 4.0 89 2.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 926780.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.554876323680222 #Duplication Level Percentage of deduplicated Percentage of total 1 81.16610785833329 19.1185763227753 2 7.809837499855058 3.679195128342516 3 2.7216515234461576 1.923244950927903 4 1.326565541036522 1.2498834901748486 5 0.7867903512046202 0.9266374707644875 6 0.5307103923750796 0.7500490593652082 7 0.3636443849421874 0.599591895917979 8 0.2769161852057619 0.5218181195637639 9 0.22470519933613015 0.4763612861685412 >10 2.6248389005831907 15.096220418589768 >50 1.2554622313434887 21.436844785296902 >100 0.9104637930450932 32.62899910008116 >500 0.0013836835760563727 0.19468583981722284 >1k 4.6122785868545757E-4 0.5216972113852143 >5k 4.6122785868545757E-4 0.8761949208291865 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8065 0.8702173115518247 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4802 0.5181380694447442 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.054813440082867565 0.0 2 0.0 0.0 0.0 0.2259435896329226 0.0 3 0.0 0.0 0.0 0.33675737499730246 0.0 4 0.0 0.0 0.0 0.5671248840069919 0.0 5 0.0 0.0 0.0 0.9257860549429207 0.0 6 0.0 0.0 0.0 1.4301128638943439 0.0 7 0.0 0.0 0.0 1.6596171691232007 0.0 8 0.0 0.0 0.0 2.2525302660825655 0.0 9 0.0 0.0 0.0 2.4493407281123893 0.0 10 0.0 0.0 0.0 2.8277476855348627 0.0 11 0.0 0.0 0.0 3.3161052245408835 0.0 12 0.0 0.0 0.0 3.661926239236928 0.0 13 0.0 0.0 0.0 3.812879000410022 0.0 14 0.0 0.0 0.0 3.8758928764107985 0.0 15 0.0 0.0 0.0 3.967608278124258 0.0 16 0.0 0.0 0.0 4.197004682880511 0.0 17 0.0 0.0 0.0 4.455318414294655 0.0 18 0.0 0.0 0.0 4.802002632771532 0.0 19 0.0 0.0 0.0 4.956731910485768 0.0 20 0.0 0.0 0.0 5.1273225576728025 0.0 21 0.0 0.0 0.0 5.392865620751419 0.0 22 0.0 0.0 0.0 5.649021342713481 0.0 23 0.0 0.0 0.0 5.9227648417100065 0.0 24 0.0 0.0 0.0 6.11558298625348 0.0 25 0.0 0.0 0.0 6.276678391851356 0.0 26 0.0 0.0 0.0 6.441550313990375 0.0 27 0.0 0.0 0.0 6.583439435464728 0.0 28 0.0 0.0 0.0 6.750577267528432 0.0 29 0.0 0.0 0.0 6.920088909989426 0.0 30 0.0 0.0 0.0 7.135566153779753 0.0 31 0.0 0.0 0.0 7.348777487645396 0.0 32 0.0 0.0 0.0 7.519583935777638 0.0 33 0.0 0.0 0.0 7.695569606594877 0.0 34 0.0 0.0 0.0 7.89076156153564 0.0 35 0.0 0.0 0.0 8.128358402209802 0.0 36 0.0 0.0 0.0 8.32344245667796 0.0 37 0.0 0.0 0.0 8.51669220311185 0.0 38 0.0 0.0 0.0 8.70573383111418 0.0 39 0.0 0.0 0.0 8.902652193616609 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGCGG 45 3.8380676E-10 45.000004 2 TATCGTG 45 3.8380676E-10 45.000004 1 CGGGTAG 20 7.032579E-4 45.0 6 CGTGGCT 20 7.032579E-4 45.0 22 CTGTCGT 40 6.8121153E-9 45.0 37 ACACGAA 20 7.032579E-4 45.0 36 GTCGACC 25 3.8902188E-5 45.0 15 CGAGTCA 20 7.032579E-4 45.0 14 GGTCGAC 25 3.8902188E-5 45.0 14 CCCTAGT 25 3.8902188E-5 45.0 35 AACCCGT 25 3.8902188E-5 45.0 37 CGGTTGC 20 7.032579E-4 45.0 31 CGTGACG 25 3.8902188E-5 45.0 19 GGCGTGT 25 3.8902188E-5 45.0 8 GACCGTA 25 3.8902188E-5 45.0 26 GAGTACG 55 1.8189894E-12 45.0 1 ATTACGC 25 3.8902188E-5 45.0 28 TTGTCGA 40 6.8121153E-9 45.0 1 CAACCCG 25 3.8902188E-5 45.0 1 ACTTCGT 25 3.8902188E-5 45.0 37 >>END_MODULE