SRR1548176_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548176_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2113321
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10211	0.48317316678346545	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6988	0.33066439031268796	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3009	0.14238253440911247	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2402	0.11365996930896916	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTAG	130	0.0	45.000004	1
CGCAAAC	35	1.2125747E-7	45.000004	29
TCGACGA	35	1.2125747E-7	45.000004	2
ATGTTCG	35	1.2125747E-7	45.000004	1
AACCGAT	25	3.8919206E-5	45.0	26
GGCGTAT	20	7.034631E-4	45.0	8
GACCGAA	20	7.034631E-4	45.0	9
CACGCTA	20	7.034631E-4	45.0	41
TCGATTG	75	0.0	45.0	1
TTATCCG	40	6.8193913E-9	45.0	1
CGTTAGA	40	6.8193913E-9	45.0	34
GCTAGCG	45	3.8562575E-10	45.0	1
ACGTAAT	25	3.8919206E-5	45.0	29
CCGCGAA	20	7.034631E-4	45.0	35
TATCGCT	25	3.8919206E-5	45.0	38
TAATGCG	90	0.0	45.0	1
CTATACG	60	0.0	44.999996	1
TACGACT	30	2.166371E-6	44.999996	15
TTGTGCG	140	0.0	43.39286	1
AACGGGA	405	0.0	42.777775	4