SRR1548173_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548173_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1281684
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7699	0.6006940868419985	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3125	0.24381984951048777	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1598	0.12467971824568302	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	205	0.0	45.000004	28
CGACGAA	25	3.891057E-5	45.000004	43
CGCGATT	25	3.891057E-5	45.000004	42
TCTAGCG	85	0.0	45.000004	1
CGCTATA	25	3.891057E-5	45.000004	39
CGTCGTT	25	3.891057E-5	45.000004	27
TCGAACG	50	2.1827873E-11	45.000004	28
TGTCCGA	25	3.891057E-5	45.000004	32
CTATGCG	20	7.0335914E-4	45.0	1
AGTTTCG	20	7.0335914E-4	45.0	34
TCCGATT	20	7.0335914E-4	45.0	42
CGCATCG	40	6.8157533E-9	45.0	21
GCTATCG	20	7.0335914E-4	45.0	12
CCAATCG	45	3.8562575E-10	45.0	24
TACGCTA	20	7.0335914E-4	45.0	33
CCGTAAT	20	7.0335914E-4	45.0	23
TACGATC	20	7.0335914E-4	45.0	42
GGGCGTA	20	7.0335914E-4	45.0	7
CGCTAAG	20	7.0335914E-4	45.0	33
GAAACGT	20	7.0335914E-4	45.0	42