##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548171_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1932815 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.104694448252936 31.0 31.0 33.0 30.0 34.0 2 31.49162025336103 31.0 31.0 34.0 30.0 34.0 3 31.6015293755481 31.0 31.0 34.0 30.0 34.0 4 35.41608120797903 37.0 35.0 37.0 33.0 37.0 5 35.26980181755626 37.0 35.0 37.0 33.0 37.0 6 35.30888108794686 37.0 35.0 37.0 32.0 37.0 7 35.730744018439424 37.0 35.0 37.0 35.0 37.0 8 35.72804639864653 37.0 35.0 37.0 35.0 37.0 9 37.43190786495345 39.0 37.0 39.0 35.0 39.0 10 36.741732136805645 39.0 37.0 39.0 32.0 39.0 11 36.453251345834964 39.0 35.0 39.0 32.0 39.0 12 35.89902499721908 37.0 35.0 39.0 31.0 39.0 13 35.687161989119495 37.0 35.0 39.0 30.0 39.0 14 36.58738420386845 38.0 35.0 41.0 31.0 41.0 15 36.830503178007206 38.0 35.0 41.0 31.0 41.0 16 36.93412975375295 38.0 35.0 41.0 31.0 41.0 17 36.80614181905666 38.0 35.0 41.0 31.0 41.0 18 36.744438552060075 38.0 35.0 40.0 31.0 41.0 19 36.68689295147234 38.0 35.0 40.0 31.0 41.0 20 36.553258330466186 38.0 35.0 40.0 31.0 41.0 21 36.41687228213771 38.0 35.0 40.0 30.0 41.0 22 36.35835297221928 38.0 35.0 40.0 30.0 41.0 23 36.281263338705465 38.0 35.0 40.0 30.0 41.0 24 36.123965304491115 38.0 34.0 40.0 30.0 41.0 25 35.98328758831031 38.0 34.0 40.0 30.0 41.0 26 35.92223984188865 38.0 34.0 40.0 30.0 41.0 27 35.90384491014401 38.0 34.0 40.0 30.0 41.0 28 35.90822608475203 38.0 34.0 40.0 30.0 41.0 29 35.92676484816188 38.0 34.0 40.0 30.0 41.0 30 35.841835354133735 38.0 34.0 40.0 29.0 41.0 31 35.72250163621454 38.0 34.0 40.0 29.0 41.0 32 35.58519206442417 38.0 34.0 40.0 29.0 41.0 33 35.452415259608394 38.0 34.0 40.0 27.0 41.0 34 35.301996311079954 38.0 34.0 40.0 27.0 41.0 35 35.140129293284666 38.0 34.0 40.0 26.0 41.0 36 34.962004640899416 38.0 34.0 40.0 25.0 41.0 37 34.880965327773225 37.0 33.0 40.0 25.0 41.0 38 34.794936401052354 37.0 33.0 40.0 25.0 41.0 39 34.75318331035304 37.0 33.0 40.0 24.0 41.0 40 34.61175228876018 37.0 33.0 40.0 24.0 41.0 41 34.540259673067524 37.0 33.0 40.0 24.0 41.0 42 34.49600918867041 37.0 33.0 40.0 24.0 41.0 43 34.396551661695504 37.0 33.0 40.0 23.0 41.0 44 34.250241745847376 37.0 33.0 40.0 23.0 41.0 45 34.165964150733515 36.0 33.0 40.0 23.0 41.0 46 34.0637598528571 36.0 33.0 40.0 23.0 41.0 47 34.026972058888205 36.0 33.0 40.0 23.0 41.0 48 33.89582344921785 36.0 33.0 40.0 23.0 41.0 49 33.78525984121605 36.0 32.0 40.0 23.0 41.0 50 33.629783502301045 35.0 32.0 40.0 23.0 41.0 51 33.274105385150676 35.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 6.0 13 13.0 14 30.0 15 92.0 16 195.0 17 538.0 18 1154.0 19 2157.0 20 3791.0 21 6127.0 22 8926.0 23 12538.0 24 17833.0 25 24223.0 26 32197.0 27 37927.0 28 42921.0 29 49859.0 30 59176.0 31 71211.0 32 86422.0 33 109543.0 34 163951.0 35 206462.0 36 157121.0 37 193277.0 38 269274.0 39 375796.0 40 50.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.442724730509646 23.066201369505098 29.436961116299283 14.054112783685971 2 29.752614709633356 25.93481528237312 30.58761443800881 13.724955569984711 3 28.120849641584943 26.11046582316466 31.95168704713074 13.816997488119659 4 25.8220781606103 28.02016747593536 31.164389763117526 14.993364600336815 5 23.16103714012981 32.54579460527779 29.768601754435885 14.524566500156508 6 23.10743656273363 39.994670985065824 26.54687592966735 10.351016522533197 7 88.16917294205602 3.8849036250236058 6.290876260790608 1.6550471721297693 8 89.06098100438997 2.779676275277251 6.208147184288201 1.9511955360445774 9 83.45402948549136 5.8155074334584524 7.947941215274095 2.782521865776083 10 40.714139739188695 36.03495419892747 13.350475860338417 9.900430201545413 11 35.471941184231284 21.8305424988941 26.725475536975864 15.97204077989875 12 32.88302294839392 21.091051135261264 28.696848896557615 17.3290770197872 13 24.169617888934017 29.55440639688744 29.071069916158553 17.204905798019986 14 18.855865667433253 32.29320964499965 30.516422937528944 18.334501750038157 15 17.557914233902366 26.519454784860425 39.0976891218249 16.824941859412306 16 21.861740518363113 24.748824900469003 35.86903040384103 17.52040417732685 17 21.779166655887916 24.389400951461987 28.79365071152697 25.03778168112313 18 23.286553550132837 24.71069398778466 32.567317617050776 19.43543484503173 19 26.19128059333149 25.856173508587215 28.2388123022638 19.713733595817498 20 27.387773791076746 26.020545163401565 28.142217439330718 18.449463606190967 21 24.366222323398773 26.251193207834167 30.21722203107902 19.165362437688035 22 24.15818378892962 23.426970506747928 29.94094106264697 22.473904641675485 23 21.496314960304012 27.047751595470853 29.317911957429963 22.138021486795168 24 21.27860141813883 25.35074489798558 33.83008720441429 19.540566479461305 25 20.230182402350973 27.193290614983844 31.517812103072462 21.058714879592717 26 20.17409840051945 30.966595354444166 28.2164614823457 20.642844762690686 27 19.834748799031466 29.605833977902694 31.022472404239416 19.536944818826427 28 18.116684731854836 27.834272809348022 34.434335412338996 19.614707046458147 29 19.240537764866268 25.864555066056504 33.78848984512227 21.106417323954958 30 21.28765556972602 27.637047518774434 31.36772013876134 19.707576772738207 31 25.79382920765826 26.501036053631623 27.842395676771964 19.862739061938157 32 26.21000975261471 27.068188109053377 27.8918054754335 18.829996662898417 33 24.853025250735328 26.983130822142833 27.662295667200432 20.50154825992141 34 21.025809505824405 26.909921539309245 29.73812806709385 22.326140887772496 35 20.92502386415668 27.71662057672359 30.23300212384527 21.12535343527446 36 25.6574478157506 26.655111844641105 28.21625453030942 19.47118580929887 37 21.150808535736736 30.067647446858597 29.117323696266844 19.664220321137822 38 21.107452084136348 29.84129365717878 27.443495626844783 21.60775863184009 39 20.97645144517194 29.10723478449826 28.14325219951211 21.773061570817692 40 23.526048794116353 26.57864306723613 27.77932704371603 22.115981094931485 41 19.803240351508034 26.08640764894726 29.244081818487544 24.866270181057164 42 22.3411449104027 26.609013278560028 27.92636646549204 23.123475345545227 43 22.287906499070008 26.38260775087114 28.572988102844814 22.75649764721404 44 20.858540522502153 28.71402591556874 28.62312223363333 21.804311328295775 45 19.41116971877805 30.944554962580483 27.1672663964218 22.477008922219664 46 21.536825821405568 29.314859414894855 28.079717924374552 21.068596839325025 47 21.337737962505464 27.524465611038824 29.237562829344764 21.900233597110947 48 21.568386006938066 26.485411174892583 30.832180006881156 21.114022811288198 49 22.203418330259233 25.18973621376076 30.807449238545853 21.799396217434158 50 20.27695356254996 29.302752720772553 29.361630575093837 21.05866314158365 51 19.586199403460753 29.996559422396867 27.894081947832568 22.523159226309815 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 870.0 1 1625.0 2 2380.0 3 10006.0 4 17632.0 5 12507.0 6 7382.0 7 7465.0 8 7548.0 9 8210.5 10 8873.0 11 9194.0 12 9515.0 13 9291.5 14 9068.0 15 8660.0 16 8252.0 17 7845.5 18 7439.0 19 7926.5 20 8414.0 21 9209.5 22 10005.0 23 11607.5 24 13210.0 25 13760.0 26 17703.5 27 21097.0 28 26657.5 29 32218.0 30 36270.0 31 40322.0 32 46218.5 33 52115.0 34 58206.0 35 64297.0 36 69156.0 37 74015.0 38 81612.5 39 89210.0 40 105693.5 41 122177.0 42 135308.5 43 148440.0 44 152307.5 45 156175.0 46 156174.5 47 156174.0 48 151309.0 49 146444.0 50 142830.5 51 139217.0 52 127362.0 53 115507.0 54 106906.5 55 98306.0 56 91287.5 57 84269.0 58 77635.0 59 71001.0 60 64149.0 61 57297.0 62 50439.5 63 43582.0 64 37912.0 65 32242.0 66 27838.5 67 23435.0 68 19697.0 69 15959.0 70 13123.5 71 10288.0 72 8174.0 73 6060.0 74 5035.5 75 3086.0 76 2161.0 77 1609.0 78 1057.0 79 778.0 80 499.0 81 339.5 82 180.0 83 128.5 84 77.0 85 60.0 86 43.0 87 31.0 88 19.0 89 17.0 90 15.0 91 9.5 92 4.0 93 3.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1932815.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.481908663515927 #Duplication Level Percentage of deduplicated Percentage of total 1 81.0673327664453 18.225483708500754 2 6.313026581284248 2.8385777398156136 3 2.038939893485808 1.375177813672405 4 1.0939034311902578 0.9837214810690421 5 0.6744872106208578 0.7581879931943879 6 0.49348941760740117 0.6656750407836757 7 0.3825998376378838 0.602110222311565 8 0.3284214071008107 0.5906832062067047 9 0.2809838529514207 0.5685347986178969 >10 4.90059336093122 29.23726706582521 >50 2.024537090629724 32.06214685064436 >100 0.400528222880111 11.278479253941217 >500 6.941563410236754E-4 0.11449572255021799 >1k 2.3138544700789174E-4 0.13686426443872038 >5k 0.0 0.0 >10k+ 2.3138544700789174E-4 0.5625948384282633 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10815 0.5595465680885134 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2631 0.13612270186230963 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.173800906967299E-5 0.0 0.0 0.03973479096550886 0.0 2 5.173800906967299E-5 0.0 0.0 0.11692790049746096 0.0 3 5.173800906967299E-5 0.0 0.0 0.17740963309990868 0.0 4 5.173800906967299E-5 0.0 0.0 0.2872494263548244 0.0 5 5.173800906967299E-5 0.0 0.0 0.5066703228193076 0.0 6 5.173800906967299E-5 0.0 0.0 0.8120280523485176 0.0 7 5.173800906967299E-5 0.0 0.0 0.9861781908770368 0.0 8 5.173800906967299E-5 0.0 0.0 1.4181905666088064 0.0 9 5.173800906967299E-5 0.0 0.0 1.595755413735924 0.0 10 5.173800906967299E-5 0.0 0.0 1.8826426740272608 0.0 11 5.173800906967299E-5 0.0 0.0 2.1658565356746506 0.0 12 5.173800906967299E-5 0.0 0.0 2.4153372154086137 0.0 13 5.173800906967299E-5 0.0 0.0 2.5237800824186483 0.0 14 5.173800906967299E-5 0.0 0.0 2.5732416190892557 0.0 15 5.173800906967299E-5 0.0 0.0 2.643243145360523 0.0 16 5.173800906967299E-5 0.0 0.0 2.763068374365886 0.0 17 5.173800906967299E-5 0.0 0.0 2.9158507151486304 0.0 18 5.173800906967299E-5 0.0 0.0 3.095174654584117 0.0 19 5.173800906967299E-5 0.0 0.0 3.2023758093764796 0.0 20 5.173800906967299E-5 0.0 0.0 3.318889805801383 0.0 21 5.173800906967299E-5 0.0 0.0 3.467119201785996 0.0 22 5.173800906967299E-5 0.0 0.0 3.631490856600347 0.0 23 5.173800906967299E-5 0.0 0.0 3.794620799197026 0.0 24 5.173800906967299E-5 0.0 0.0 3.9244314639528355 0.0 25 5.173800906967299E-5 0.0 0.0 4.037272061733792 0.0 26 5.173800906967299E-5 0.0 0.0 4.144059312453598 0.0 27 5.173800906967299E-5 0.0 0.0 4.266574917930583 0.0 28 5.173800906967299E-5 0.0 0.0 4.383658032455253 0.0 29 5.173800906967299E-5 0.0 0.0 4.523040228888952 0.0 30 5.173800906967299E-5 0.0 0.0 4.701898526242812 0.0 31 5.173800906967299E-5 0.0 0.0 4.848161877882777 0.0 32 5.173800906967299E-5 0.0 0.0 4.993597421377628 0.0 33 5.173800906967299E-5 0.0 0.0 5.134428282065278 0.0 34 5.173800906967299E-5 0.0 0.0 5.299369054979396 0.0 35 5.173800906967299E-5 0.0 0.0 5.475692189888841 0.0 36 5.173800906967299E-5 0.0 0.0 5.628888434744143 0.0 37 1.0347601813934598E-4 0.0 0.0 5.787155004488272 0.0 38 1.0347601813934598E-4 0.0 0.0 5.973670527184443 0.0 39 1.0347601813934598E-4 0.0 0.0 6.280528658976674 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTAGG 185 0.0 42.567566 2 CGTTTTT 6475 0.0 41.525097 1 CGGTCTA 110 0.0 40.909092 31 CGCGTAA 55 6.184564E-11 40.909092 31 TACGGGA 735 0.0 40.714287 4 GGGCGAT 2705 0.0 39.926064 7 GGCGATA 630 0.0 39.642857 8 TACGGGT 120 0.0 39.375004 4 GCGTTAG 115 0.0 39.130432 1 TATTGCG 115 0.0 39.130432 1 ACGGGAT 955 0.0 38.638744 5 TCGAATA 35 6.2504987E-6 38.57143 17 GCGTAAG 165 0.0 38.18182 1 CCGTCGA 30 1.14020964E-4 37.500004 13 TTACGCG 30 1.14020964E-4 37.500004 1 AGGGATC 2160 0.0 37.395832 6 AGGGCGA 1505 0.0 37.375416 6 ACGGGAC 660 0.0 37.159092 5 TGGGCGA 800 0.0 37.125 6 ACATACG 435 0.0 36.724136 17 >>END_MODULE