SRR1548170_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548170_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1327214
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7379	0.5559766548574684	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4880	0.36768750178946275	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACA	20	7.033681E-4	45.000004	20
CTATCGT	20	7.033681E-4	45.000004	31
CGTCTAT	20	7.033681E-4	45.000004	43
AAGCGCC	20	7.033681E-4	45.000004	21
CACTGCG	20	7.033681E-4	45.000004	1
CCGCTAT	20	7.033681E-4	45.000004	14
TACGCAG	20	7.033681E-4	45.000004	14
CGTAGGT	20	7.033681E-4	45.000004	10
CTACGCG	40	6.8157533E-9	45.000004	1
CTACGAT	20	7.033681E-4	45.000004	31
GTGTCGA	20	7.033681E-4	45.000004	18
TCGTCTA	20	7.033681E-4	45.000004	22
CATACGT	20	7.033681E-4	45.000004	18
TCCCGAA	40	6.8157533E-9	45.000004	28
ATCGCAC	20	7.033681E-4	45.000004	40
ACGACGA	20	7.033681E-4	45.000004	34
GTCGGTA	35	1.21212E-7	45.000004	37
TACCCGT	25	3.891134E-5	44.999996	1
ACGTTAG	50	2.1827873E-11	44.999996	1
CGTGCGC	25	3.891134E-5	44.999996	18