##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548169_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2765317 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.14947978839316 31.0 31.0 33.0 30.0 34.0 2 31.539254993188845 31.0 31.0 34.0 30.0 34.0 3 31.634252420246938 31.0 31.0 34.0 30.0 34.0 4 35.45625655214212 37.0 35.0 37.0 33.0 37.0 5 35.31061719144677 37.0 35.0 37.0 33.0 37.0 6 35.35335695690584 37.0 35.0 37.0 33.0 37.0 7 35.77502579270297 37.0 35.0 37.0 35.0 37.0 8 35.76552380793956 37.0 35.0 37.0 35.0 37.0 9 37.490523871223445 39.0 37.0 39.0 35.0 39.0 10 36.80963231340204 39.0 37.0 39.0 32.0 39.0 11 36.49671122695879 39.0 35.0 39.0 32.0 39.0 12 35.961693361014305 37.0 35.0 39.0 31.0 39.0 13 35.755648629072184 37.0 35.0 39.0 30.0 39.0 14 36.69383799398044 39.0 35.0 41.0 31.0 41.0 15 36.90700559827318 39.0 35.0 41.0 31.0 41.0 16 36.9794631139938 38.0 35.0 41.0 32.0 41.0 17 36.84679333327789 38.0 35.0 41.0 31.0 41.0 18 36.77891974048545 38.0 35.0 40.0 31.0 41.0 19 36.70015047099483 38.0 35.0 40.0 31.0 41.0 20 36.59492636829702 38.0 35.0 40.0 31.0 41.0 21 36.45892170771018 38.0 35.0 40.0 30.0 41.0 22 36.38906751016249 38.0 35.0 40.0 30.0 41.0 23 36.32677302457548 38.0 35.0 40.0 30.0 41.0 24 36.16914118706825 38.0 34.0 40.0 30.0 41.0 25 36.03891995022632 38.0 34.0 40.0 30.0 41.0 26 35.994871835670196 38.0 34.0 40.0 30.0 41.0 27 35.99063904789216 38.0 34.0 40.0 30.0 41.0 28 36.01567234425565 38.0 35.0 40.0 30.0 41.0 29 36.04062861509187 38.0 35.0 40.0 30.0 41.0 30 35.94348532193597 38.0 35.0 40.0 30.0 41.0 31 35.804656392015815 38.0 34.0 40.0 29.0 41.0 32 35.658952300947774 38.0 34.0 40.0 29.0 41.0 33 35.52496259922461 38.0 34.0 40.0 28.0 41.0 34 35.365724797554854 38.0 34.0 40.0 27.0 41.0 35 35.189109602985845 38.0 34.0 40.0 26.0 41.0 36 35.043546182951175 38.0 34.0 40.0 25.0 41.0 37 34.9844061277604 38.0 34.0 40.0 25.0 41.0 38 34.90434514379364 38.0 34.0 40.0 25.0 41.0 39 34.86522123865004 37.0 34.0 40.0 25.0 41.0 40 34.737529910675704 37.0 33.0 40.0 24.0 41.0 41 34.67176963798364 37.0 33.0 40.0 24.0 41.0 42 34.622671831113756 37.0 33.0 40.0 24.0 41.0 43 34.52808954633411 37.0 33.0 40.0 24.0 41.0 44 34.39356319727539 37.0 33.0 40.0 23.0 41.0 45 34.311110444119066 37.0 33.0 40.0 23.0 41.0 46 34.200971534185776 36.0 33.0 40.0 23.0 41.0 47 34.15352742560798 36.0 33.0 40.0 23.0 41.0 48 34.053020322805665 36.0 33.0 40.0 23.0 41.0 49 33.94505150765717 36.0 33.0 40.0 23.0 41.0 50 33.81549059294106 36.0 33.0 40.0 23.0 41.0 51 33.45948764644343 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 8.0 12 8.0 13 15.0 14 39.0 15 137.0 16 284.0 17 697.0 18 1585.0 19 2979.0 20 5084.0 21 7936.0 22 11838.0 23 17013.0 24 24293.0 25 33987.0 26 44748.0 27 54003.0 28 60443.0 29 69147.0 30 82041.0 31 98386.0 32 121151.0 33 153740.0 34 235173.0 35 297273.0 36 221396.0 37 272827.0 38 389590.0 39 559413.0 40 79.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.09071509703951 24.26372817293641 29.867100227568848 13.778456502455233 2 30.921662869030932 25.440880738085365 30.3243353293673 13.313121063516405 3 28.855606789384364 25.620426157290467 31.776610059533862 13.74735699379131 4 25.841341155462466 27.840750264797855 31.243687432580064 15.07422114715962 5 22.772904516914334 32.86270615629239 30.345598714360776 14.0187906124325 6 22.07605854952615 40.87368645258392 26.819999298452945 10.230255699436992 7 88.78085224948894 3.333252571043392 6.455498592023988 1.430396587443682 8 89.5838343307476 2.5873706341804574 6.210535717966511 1.618259317105417 9 84.3418674965655 5.587713813642342 7.676552091496201 2.393866598295964 10 40.97273477145658 36.38823324776147 13.093435580803215 9.545596399978736 11 34.57354075500205 22.70792100869448 26.913984906612875 15.804553329690593 12 32.847445699715436 22.117319641834914 28.650422356641208 16.384812301808434 13 24.79654231323208 29.21256405685135 28.625072640858175 17.3658209890584 14 18.561090826115052 32.136062520137834 30.2611237698969 19.041722883850206 15 18.30777447938157 26.129264746139413 39.1392379246213 16.423722849857718 16 22.467514574278464 24.124431303897527 36.480121447197554 16.927932674626454 17 21.930180156560713 24.019452381047092 29.48410616215067 24.566261300241525 18 23.4185086194458 24.894867387717213 32.987393488703106 18.699230504133883 19 25.869077577724365 26.565959707331928 28.832101346789536 18.732861368154175 20 27.652742886258608 26.276083356808638 28.346442740561027 17.724731016371724 21 24.970808048408195 26.55637671919711 30.248358506456945 18.22445672593775 22 24.17415435554043 23.720716286776526 30.458497163254698 21.646632194428342 23 20.930656412989904 27.459383499251622 30.09748972721753 21.512470360540945 24 21.761483403168604 25.506370517376485 34.16874087129975 18.56340520815516 25 20.739683732461774 26.86860132129517 32.034157385934414 20.357557560308635 26 19.583541416770665 31.397123729395222 28.25574789436437 20.763586959469745 27 18.763707741282467 30.39185019294352 31.48803554890814 19.356406516865878 28 17.453044262194894 28.6055088801754 34.51716385499384 19.424283002635864 29 19.488651753126316 26.43913880397799 33.710457065139366 20.36175237775633 30 20.972821560783085 28.27259948859389 32.034048899276286 18.720530051346735 31 25.450355239562043 26.916154639775474 28.651796520977523 18.981693599684952 32 26.05173294779586 26.622879040630785 29.016022394539213 18.30936561703414 33 24.942456868416894 27.43725222099311 28.32373286679249 19.29655804379751 34 20.99560375899038 28.06991024898773 30.004299687883883 20.930186304138008 35 20.07560073582884 28.216005615269424 31.327077510462637 20.3813161384391 36 24.864129501247053 27.911013457046696 28.231410720723883 18.99344632098237 37 20.96736106565721 30.78793498177605 29.053052507180915 19.191651445385826 38 21.282876429718545 30.423492134898094 27.29271183014461 21.00091960523875 39 20.670541569013608 30.085990141455753 28.465778064504 20.777690225026642 40 23.043470242290486 27.897054840367307 27.853443203799056 21.20603171354315 41 19.49917495896492 26.363523603261395 29.320689092787553 24.816612344986126 42 21.232900242540005 26.995241413552222 27.852719959411527 23.919138384496243 43 21.335130836717816 26.75505195245247 28.478796463479593 23.43102074735012 44 19.87945685792985 28.466754444427167 29.49889650987572 22.15489218776726 45 19.54611351971582 31.08988951357114 27.381562403153055 21.982434563559984 46 20.991047319348922 30.848615185890083 27.829250679036072 20.331086815724923 47 20.241693809425826 28.422853510103906 29.36216715841258 21.97328552205769 48 21.108429883445552 26.729051316720653 31.20054590486371 20.96197289497009 49 21.271846952808666 26.437873126299806 30.562825166156358 21.72745475473517 50 20.30092752476479 29.709035166673477 29.114636766779363 20.875400541782373 51 19.702081171887347 29.84109959183703 28.077865937250596 22.37895329902503 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1445.0 1 2650.5 2 3856.0 3 16944.5 4 30033.0 5 21046.5 6 12060.0 7 12125.0 8 12190.0 9 12977.5 10 13765.0 11 14091.0 12 14417.0 13 14401.5 14 14386.0 15 13585.0 16 12784.0 17 12428.5 18 12073.0 19 11980.5 20 11888.0 21 12500.0 22 13112.0 23 14726.0 24 16340.0 25 19617.5 26 27616.5 27 32338.0 28 39778.0 29 47218.0 30 57198.0 31 67178.0 32 72535.5 33 77893.0 34 88368.0 35 98843.0 36 103154.0 37 107465.0 38 118413.0 39 129361.0 40 154088.5 41 178816.0 42 199969.0 43 221122.0 44 223656.5 45 226191.0 46 222816.0 47 219441.0 48 213562.0 49 207683.0 50 197444.5 51 187206.0 52 172784.5 53 158363.0 54 147179.5 55 135996.0 56 127091.5 57 118187.0 58 109795.5 59 101404.0 60 91227.5 61 81051.0 62 71004.0 63 60957.0 64 52465.5 65 43974.0 66 36203.5 67 28433.0 68 23170.5 69 17908.0 70 14676.5 71 11445.0 72 9179.5 73 6914.0 74 5704.5 75 3329.0 76 2163.0 77 1656.0 78 1149.0 79 822.5 80 496.0 81 328.0 82 160.0 83 135.5 84 111.0 85 85.0 86 59.0 87 42.0 88 25.0 89 19.5 90 14.0 91 10.0 92 6.0 93 5.5 94 5.0 95 3.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2765317.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.24348813737716 #Duplication Level Percentage of deduplicated Percentage of total 1 81.83409068662161 16.566074440476715 2 6.517101426407514 2.638577308311285 3 2.0161293022543063 1.224404688408106 4 1.0456337354247331 0.846690964764478 5 0.669219363952433 0.6773667127737084 6 0.467836731113547 0.5682388389915838 7 0.3265765244643857 0.46277335992584573 8 0.27217536332070386 0.44078229909351885 9 0.2418356486953552 0.44060373770034006 >10 3.683024487047847 19.066214789274703 >50 1.8951390520556837 27.6730527298732 >100 1.0288939626127211 28.343583731423074 >500 0.0018028584839876306 0.22277246501457346 >1k 3.6057169679752616E-4 0.17361215859671134 >5k 0.0 0.0 >10k+ 1.8028584839876308E-4 0.655251775372158 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17954 0.6492564866885062 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3387 0.12248143702873848 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.616221937665736E-5 0.0 0.0 0.021118736115967898 0.0 2 3.616221937665736E-5 0.0 0.0 0.06664697031117951 0.0 3 3.616221937665736E-5 0.0 0.0 0.09966307660206768 0.0 4 3.616221937665736E-5 0.0 0.0 0.16565912696446736 0.0 5 3.616221937665736E-5 0.0 0.0 0.2886106728451024 0.0 6 3.616221937665736E-5 0.0 0.0 0.49625413650586897 0.0 7 3.616221937665736E-5 0.0 0.0 0.6175783825145544 0.0 8 3.616221937665736E-5 0.0 0.0 0.9087927351547761 0.0 9 3.616221937665736E-5 0.0 0.0 1.0351073674374403 0.0 10 3.616221937665736E-5 0.0 0.0 1.2289730255157003 0.0 11 3.616221937665736E-5 0.0 0.0 1.442727904251122 0.0 12 3.616221937665736E-5 0.0 0.0 1.6177530460341436 0.0 13 7.232443875331472E-5 0.0 0.0 1.6989372285347395 0.0 14 7.232443875331472E-5 0.0 0.0 1.7400175097466222 0.0 15 7.232443875331472E-5 0.0 0.0 1.7852926084061973 0.0 16 7.232443875331472E-5 0.0 0.0 1.874721776924671 0.0 17 7.232443875331472E-5 0.0 0.0 1.9842209771971893 0.0 18 7.232443875331472E-5 0.0 0.0 2.115236697998819 0.0 19 7.232443875331472E-5 0.0 0.0 2.198807586978274 0.0 20 1.0848665812997207E-4 0.0 0.0 2.2957946593464693 0.0 21 1.0848665812997207E-4 0.0 0.0 2.4130325745655923 0.0 22 1.0848665812997207E-4 0.0 0.0 2.542565644372779 0.0 23 1.0848665812997207E-4 0.0 0.0 2.6800544024428303 0.0 24 1.0848665812997207E-4 0.0 0.0 2.7862990029714494 0.0 25 1.0848665812997207E-4 0.0 0.0 2.8776809313362626 0.0 26 1.0848665812997207E-4 0.0 0.0 2.9670739376353596 0.0 27 1.0848665812997207E-4 0.0 0.0 3.0646034432942044 0.0 28 1.0848665812997207E-4 0.0 0.0 3.1628923555599595 0.0 29 1.0848665812997207E-4 0.0 0.0 3.279551675269056 0.0 30 1.0848665812997207E-4 0.0 0.0 3.4302396434115874 0.0 31 1.0848665812997207E-4 0.0 0.0 3.5612915264325933 0.0 32 1.0848665812997207E-4 0.0 0.0 3.689558918561597 0.0 33 1.0848665812997207E-4 0.0 0.0 3.82010453051133 0.0 34 1.0848665812997207E-4 0.0 0.0 3.9548811221281324 0.0 35 1.0848665812997207E-4 0.0 0.0 4.111535856467812 0.0 36 1.4464887750662944E-4 0.0 0.0 4.248662992344096 0.0 37 1.4464887750662944E-4 0.0 0.0 4.398266093905328 0.0 38 1.4464887750662944E-4 0.0 0.0 4.577811513110432 0.0 39 1.4464887750662944E-4 0.0 0.0 4.837130788260442 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGTAAG 225 0.0 43.0 1 CGTTTTT 10200 0.0 41.73529 1 TAATGCG 125 0.0 39.600002 1 TACGGGA 1295 0.0 39.440155 4 ACGGGAC 965 0.0 39.404144 5 CGGTCTA 240 0.0 39.374996 31 TAGTACG 195 0.0 39.23077 1 ACGGGAT 1430 0.0 39.02098 5 GTTAGCG 145 0.0 38.793102 1 CGAACTA 35 6.2514773E-6 38.571426 42 GGCGATA 895 0.0 38.463684 8 AAGGGAT 4800 0.0 37.96875 5 GCGATAA 190 0.0 37.894737 9 ATAGGGA 4950 0.0 37.68182 4 TAGGGAC 2860 0.0 37.604897 5 TTTCGCG 90 0.0 37.5 1 CCTAACG 30 1.14033704E-4 37.499996 16 CGCAATA 60 1.5643309E-10 37.499996 27 TAGGGAT 4635 0.0 37.427185 5 GGGCGAT 3795 0.0 37.2332 7 >>END_MODULE