SRR1548168_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548168_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1836932
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9210	0.5013794740360558	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3907	0.21269159664048534	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCG	2738	0.149052877297581	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGC	2261	0.12308566675304257	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC	2068	0.11257901762286247	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTAT	30	2.1662145E-6	45.000004	10
CCGAATC	65	0.0	45.000004	16
TAATGCG	70	0.0	45.000004	1
CGAACGT	20	7.0343906E-4	45.0	38
CGGTTGC	20	7.0343906E-4	45.0	37
CGCGATT	20	7.0343906E-4	45.0	43
TCTACGT	20	7.0343906E-4	45.0	43
GTATGCG	40	6.8193913E-9	45.0	1
TCGCTCA	20	7.0343906E-4	45.0	19
ACGTGCG	50	2.1827873E-11	45.0	1
GTACTAC	25	3.8917202E-5	45.0	11
CGAATCT	40	6.8193913E-9	45.0	17
CGTCGGA	20	7.0343906E-4	45.0	25
TACTACG	25	3.8917202E-5	45.0	1
CCGGTAC	20	7.0343906E-4	45.0	11
CGACTCA	20	7.0343906E-4	45.0	20
CGACTAT	25	3.8917202E-5	45.0	21
CGCAAAT	20	7.0343906E-4	45.0	31
CGTCATT	20	7.0343906E-4	45.0	38
ATCGCGA	20	7.0343906E-4	45.0	10