##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548168_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1836932 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.17730378696653 31.0 31.0 33.0 30.0 34.0 2 31.564164051799413 31.0 31.0 34.0 30.0 34.0 3 31.663824790465842 31.0 31.0 34.0 30.0 34.0 4 35.47504806928074 37.0 35.0 37.0 33.0 37.0 5 35.30655571354846 37.0 35.0 37.0 33.0 37.0 6 35.36556769657233 37.0 35.0 37.0 33.0 37.0 7 35.749383210701325 37.0 35.0 37.0 35.0 37.0 8 35.74146783876594 37.0 35.0 37.0 35.0 37.0 9 37.48149795419754 39.0 37.0 39.0 35.0 39.0 10 36.8510712427025 39.0 37.0 39.0 32.0 39.0 11 36.541450091783474 39.0 35.0 39.0 32.0 39.0 12 35.708877628567635 37.0 35.0 39.0 31.0 39.0 13 35.33282288075988 37.0 35.0 39.0 30.0 39.0 14 36.269207025627516 38.0 35.0 40.0 30.0 41.0 15 36.57757608882637 38.0 35.0 40.0 31.0 41.0 16 36.75459788386288 38.0 35.0 40.0 32.0 41.0 17 36.61801253394246 38.0 35.0 40.0 31.0 41.0 18 36.57906389566952 38.0 35.0 40.0 31.0 41.0 19 36.50839878667256 38.0 35.0 40.0 31.0 41.0 20 36.360534303937214 38.0 35.0 40.0 31.0 41.0 21 36.20355081189723 38.0 34.0 40.0 30.0 41.0 22 36.095695431295226 38.0 34.0 40.0 30.0 41.0 23 36.03289071125115 37.0 34.0 40.0 30.0 41.0 24 35.895661897119766 37.0 34.0 40.0 30.0 41.0 25 35.7892066772205 37.0 34.0 40.0 30.0 41.0 26 35.72728168489634 37.0 34.0 40.0 30.0 41.0 27 35.69353574329371 37.0 34.0 40.0 30.0 41.0 28 35.73801044350036 37.0 34.0 40.0 30.0 41.0 29 35.81276933495633 37.0 34.0 40.0 30.0 41.0 30 35.791024381958614 37.0 34.0 40.0 30.0 41.0 31 35.638466203430504 37.0 34.0 40.0 30.0 41.0 32 35.46593559260767 37.0 34.0 40.0 29.0 41.0 33 35.34912724042044 37.0 34.0 40.0 29.0 41.0 34 35.242523403152646 37.0 34.0 40.0 28.0 41.0 35 35.09947074796454 37.0 34.0 40.0 27.0 41.0 36 34.894374968697804 37.0 34.0 40.0 26.0 41.0 37 34.78585761476201 37.0 33.0 40.0 25.0 41.0 38 34.7449758619263 36.0 33.0 40.0 26.0 41.0 39 34.73703653700845 36.0 34.0 40.0 26.0 41.0 40 34.5760964477727 36.0 33.0 40.0 24.0 41.0 41 34.56265174758783 36.0 33.0 40.0 25.0 41.0 42 34.510665609832046 36.0 33.0 40.0 24.0 41.0 43 34.392722757293136 36.0 33.0 40.0 24.0 41.0 44 34.27661448545727 36.0 33.0 40.0 24.0 41.0 45 34.17842903275679 35.0 33.0 40.0 24.0 41.0 46 34.07229608934898 35.0 33.0 40.0 23.0 41.0 47 34.04334891003042 35.0 33.0 40.0 23.0 41.0 48 33.9699978006807 35.0 33.0 40.0 23.0 41.0 49 33.88664958746431 35.0 33.0 39.0 24.0 41.0 50 33.72377638366581 35.0 33.0 39.0 24.0 41.0 51 33.35541653147749 35.0 32.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 2.0 12 1.0 13 7.0 14 27.0 15 67.0 16 154.0 17 443.0 18 919.0 19 1810.0 20 3190.0 21 5194.0 22 8116.0 23 11557.0 24 15994.0 25 21838.0 26 29038.0 27 34547.0 28 40253.0 29 46221.0 30 55030.0 31 67708.0 32 84600.0 33 109071.0 34 178444.0 35 244532.0 36 136232.0 37 166338.0 38 234804.0 39 340717.0 40 75.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.217397268924486 23.90611084133762 29.510401038252915 13.366090851484977 2 29.44382263469742 26.71726552752089 30.22757510893163 13.611336728850059 3 28.40132351115882 26.855485124109112 31.6051982327054 13.137993132026663 4 26.498204615086458 27.10617486112714 31.690830145046196 14.704790378740205 5 24.220929245067317 32.627065128159344 29.307508388987724 13.844497237785614 6 21.557847541444104 41.456896608039926 26.299884807929747 10.685371042586226 7 87.54864088599905 4.275661810018009 6.659527952041774 1.5161693519411716 8 88.20370051803769 4.05850624846211 5.873924565525561 1.8638686679746448 9 83.5222534094893 6.035008372656146 7.204458303301374 3.2382799145531793 10 45.727005681211935 32.73496242648067 11.9908630259585 9.54716886634889 11 43.01405822316776 20.621939189910133 22.914892875729752 13.449109711192358 12 38.906448360636105 21.56770092741593 24.537544122482487 14.988306589465477 13 22.822673893208894 36.37554356938635 25.365555175695125 15.436227361709633 14 16.697243011717365 39.81214329109624 27.433514142058606 16.057099555127788 15 14.996853449120598 26.251761088597725 43.77875718861667 14.972628273665004 16 18.145690749575923 22.14039496290554 42.15403727519582 17.55987701232272 17 17.634240135181923 22.825069191456187 28.93612828346395 30.60456238989794 18 21.757582752110586 25.69588857943571 32.13793433834241 20.408594330111292 19 27.71229419488582 26.129437562196095 26.539904580028 19.61836366289008 20 30.487138337183957 25.263373930009386 26.308540544777927 17.940947188028737 21 23.215230612782616 27.685347089603752 29.268203722293478 19.831218575320154 22 24.149179174841528 24.211892438043435 27.32240496654204 24.316523420573 23 19.951418996457136 29.83469175777873 27.150487878702094 23.063401367062035 24 20.651118277649907 25.49713326350676 36.29040160441432 17.561346854429015 25 17.968765310855275 27.090714299712783 34.076002813386665 20.864517576045273 26 18.020373100365177 34.494308989118814 28.023682967034162 19.461634943481847 27 19.094827680066544 34.02118314668153 29.431900582057473 17.452088591194446 28 16.066299677941263 30.59367467059205 36.81137897320097 16.52864667826572 29 16.74661881876956 26.134391474480275 36.512402201061334 20.606587505688832 30 19.430332750477426 29.98989619648414 31.965418425940644 18.61435262709779 31 27.271069370014782 27.32425587882404 26.584108720409898 18.820566030751273 32 27.72056886155829 27.984541616129505 27.59759207199831 16.69729745031389 33 25.66632842152023 28.44824958136719 25.90847129888314 19.97695069822944 34 19.452652575054493 29.38813195044781 28.536984493710165 22.62223098078753 35 20.29144247037996 27.212602317342178 30.30155716161513 22.194398050662738 36 27.689429984343462 26.573275439700545 27.620184089558027 18.117110486397973 37 20.61932613727672 32.13907754886953 29.421720564506472 17.81987574934728 38 20.27217120720854 32.98701312841194 24.636295736586874 22.104519927792644 39 20.88700071641193 30.8231333549636 28.108607177620076 20.181258751004393 40 23.5270548937032 27.26121598404296 26.732780527531773 22.47894859472207 41 17.554106521090603 26.722382755594655 28.2533049671953 27.47020575611944 42 21.940605313642532 26.657274194145458 26.391668281678367 25.01045221053365 43 23.055344454775682 26.47789901858098 26.644807755540217 23.82194877110312 44 19.860506540252988 31.364144127273086 27.8604216160424 20.914927716431528 45 18.043563942486713 35.24256749841584 24.853179105160127 21.860689453937326 46 21.678864541529027 32.72886530366938 25.738840632097432 19.85342952270416 47 21.416524944853702 28.530887370898867 28.200445089965225 21.852142594282206 48 23.459605472603233 25.75087156193044 30.076181371983285 20.713341593483047 49 21.17182345345391 25.07556077198285 31.600081004631637 22.152534769931602 50 19.025745101070697 31.716688478397675 28.952350985229717 20.305215435301903 51 18.926285785211427 32.226124864720084 25.96437973751886 22.88320961254962 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1220.0 1 1868.5 2 2517.0 3 8932.5 4 15348.0 5 11083.5 6 6819.0 7 7036.0 8 7253.0 9 7775.5 10 8298.0 11 8583.0 12 8868.0 13 8522.5 14 8177.0 15 7830.5 16 7484.0 17 7096.0 18 6708.0 19 6920.0 20 7132.0 21 7599.5 22 8067.0 23 9068.0 24 10069.0 25 11830.0 26 16485.5 27 19380.0 28 23078.0 29 26776.0 30 32468.0 31 38160.0 32 42966.0 33 47772.0 34 50256.0 35 52740.0 36 57771.5 37 62803.0 38 73982.5 39 85162.0 40 108687.0 41 132212.0 42 154347.0 43 176482.0 44 178546.0 45 180610.0 46 177555.0 47 174500.0 48 160311.0 49 146122.0 50 137978.0 51 129834.0 52 118161.5 53 106489.0 54 93725.5 55 80962.0 56 73981.5 57 67001.0 58 61578.0 59 56155.0 60 52315.0 61 48475.0 62 40573.0 63 32671.0 64 27293.0 65 21915.0 66 18472.5 67 15030.0 68 12145.0 69 9260.0 70 7895.0 71 6530.0 72 5202.0 73 3874.0 74 2784.5 75 1589.5 76 1484.0 77 978.0 78 472.0 79 522.0 80 572.0 81 343.0 82 114.0 83 105.0 84 96.0 85 56.0 86 16.0 87 12.0 88 8.0 89 6.5 90 5.0 91 4.5 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1836932.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.583989589769775 #Duplication Level Percentage of deduplicated Percentage of total 1 82.50600558617977 15.332907489070516 2 7.245950831519893 2.693173496418987 3 2.088351830676269 1.164297260431933 4 0.9630765521770134 0.7159121847923593 5 0.5524680463963544 0.5133530211455147 6 0.38074059014560857 0.4245407498201274 7 0.2837661046367452 0.3691454434149155 8 0.21362434258247487 0.31759940469393 9 0.17173004207420767 0.2872286382742021 >10 2.50442796362154 12.128589282702215 >50 1.5735336669571647 21.471887055796948 >100 1.5074777426652082 42.48857462673798 >500 0.006487580269680252 0.7741925043164436 >1k 0.0020642300858073528 0.8138693906422809 >5k 2.9489001225819323E-4 0.5047294517416611 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9210 0.5013794740360558 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3907 0.21269159664048534 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCG 2738 0.149052877297581 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGC 2261 0.12308566675304257 No Hit GAATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC 2068 0.11257901762286247 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.032554280724599496 0.0 2 0.0 0.0 0.0 0.11981935096127674 0.0 3 0.0 0.0 0.0 0.16249921064035033 0.0 4 0.0 0.0 0.0 0.31699594759087435 0.0 5 0.0 0.0 0.0 0.614938386396448 0.0 6 0.0 0.0 0.0 0.839987544449114 0.0 7 0.0 0.0 0.0 0.9782071410373383 0.0 8 0.0 0.0 0.0 1.329499404441754 0.0 9 0.0 0.0 0.0 1.4328782992511426 0.0 10 0.0 0.0 0.0 1.7812308784429691 0.0 11 0.0 0.0 0.0 2.027511089142113 0.0 12 5.443859652943059E-5 0.0 0.0 2.3732506157005266 0.0 13 5.443859652943059E-5 0.0 0.0 2.4667216859415593 0.0 14 5.443859652943059E-5 0.0 0.0 2.505754159653161 0.0 15 5.443859652943059E-5 0.0 0.0 2.583002528128423 0.0 16 5.443859652943059E-5 0.0 0.0 2.7064692650571716 0.0 17 5.443859652943059E-5 0.0 0.0 2.844525545855807 0.0 18 5.443859652943059E-5 0.0 0.0 3.0179669143985732 0.0 19 5.443859652943059E-5 0.0 0.0 3.136044230270908 0.0 20 5.443859652943059E-5 0.0 0.0 3.2482421777180646 0.0 21 5.443859652943059E-5 0.0 0.0 3.386189581323642 0.0 22 5.443859652943059E-5 0.0 0.0 3.533010476163516 0.0 23 5.443859652943059E-5 0.0 0.0 3.682825493812509 0.0 24 5.443859652943059E-5 0.0 0.0 3.7954045114353714 0.0 25 5.443859652943059E-5 0.0 0.0 3.892631844836935 0.0 26 5.443859652943059E-5 0.0 0.0 3.9884437747287325 0.0 27 5.443859652943059E-5 0.0 0.0 4.085344476551119 0.0 28 1.0887719305886118E-4 0.0 0.0 4.193568406451627 0.0 29 1.0887719305886118E-4 0.0 0.0 4.305221967933489 0.0 30 1.0887719305886118E-4 0.0 0.0 4.435493529428417 0.0 31 1.0887719305886118E-4 0.0 0.0 4.5721344067172875 0.0 32 1.0887719305886118E-4 0.0 0.0 4.699847354175332 0.0 33 1.0887719305886118E-4 0.0 0.0 4.816291512151784 0.0 34 1.0887719305886118E-4 0.0 0.0 4.944222213995945 0.0 35 1.0887719305886118E-4 0.0 0.0 5.092621828135173 0.0 36 1.0887719305886118E-4 0.0 0.0 5.228119494896926 0.0 37 1.0887719305886118E-4 0.0 0.0 5.379839863424449 0.0 38 1.0887719305886118E-4 0.0 0.0 5.515718600361907 0.0 39 1.0887719305886118E-4 0.0 0.0 5.6619951092364875 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCTAT 30 2.1662145E-6 45.000004 10 CCGAATC 65 0.0 45.000004 16 TAATGCG 70 0.0 45.000004 1 CGAACGT 20 7.0343906E-4 45.0 38 CGGTTGC 20 7.0343906E-4 45.0 37 CGCGATT 20 7.0343906E-4 45.0 43 TCTACGT 20 7.0343906E-4 45.0 43 GTATGCG 40 6.8193913E-9 45.0 1 TCGCTCA 20 7.0343906E-4 45.0 19 ACGTGCG 50 2.1827873E-11 45.0 1 GTACTAC 25 3.8917202E-5 45.0 11 CGAATCT 40 6.8193913E-9 45.0 17 CGTCGGA 20 7.0343906E-4 45.0 25 TACTACG 25 3.8917202E-5 45.0 1 CCGGTAC 20 7.0343906E-4 45.0 11 CGACTCA 20 7.0343906E-4 45.0 20 CGACTAT 25 3.8917202E-5 45.0 21 CGCAAAT 20 7.0343906E-4 45.0 31 CGTCATT 20 7.0343906E-4 45.0 38 ATCGCGA 20 7.0343906E-4 45.0 10 >>END_MODULE