##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548164_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1938803 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.126073149257557 31.0 31.0 33.0 30.0 34.0 2 31.499439602682685 31.0 31.0 34.0 30.0 34.0 3 31.457983095755473 31.0 31.0 34.0 30.0 34.0 4 35.35799562926197 37.0 35.0 37.0 33.0 37.0 5 35.2543718985374 37.0 35.0 37.0 33.0 37.0 6 35.31528164542762 37.0 35.0 37.0 32.0 37.0 7 35.74987866224676 37.0 35.0 37.0 35.0 37.0 8 35.74949130984427 37.0 35.0 37.0 35.0 37.0 9 37.47595604091803 39.0 37.0 39.0 35.0 39.0 10 36.78605046515814 39.0 37.0 39.0 32.0 39.0 11 36.497274349173175 39.0 35.0 39.0 32.0 39.0 12 36.00289869574165 38.0 35.0 39.0 31.0 39.0 13 35.79857984539945 38.0 35.0 39.0 30.0 39.0 14 36.76782014469753 39.0 35.0 41.0 31.0 41.0 15 37.00439807448204 39.0 35.0 41.0 31.0 41.0 16 37.09089319544069 39.0 35.0 41.0 32.0 41.0 17 36.9554823259506 39.0 35.0 41.0 31.0 41.0 18 36.82411312546969 38.0 35.0 40.0 31.0 41.0 19 36.65813287889486 38.0 35.0 40.0 31.0 41.0 20 36.434093613430555 38.0 35.0 40.0 31.0 41.0 21 36.28279871652767 38.0 35.0 40.0 30.0 41.0 22 36.21808301307559 38.0 35.0 40.0 30.0 41.0 23 36.14427458591719 38.0 35.0 40.0 30.0 41.0 24 35.948385163423 37.0 34.0 40.0 30.0 41.0 25 35.798389521782255 37.0 34.0 40.0 30.0 41.0 26 35.71422160993149 37.0 34.0 40.0 30.0 41.0 27 35.64949094879676 37.0 34.0 40.0 29.0 41.0 28 35.63473957900828 37.0 34.0 40.0 29.0 41.0 29 35.61952400527542 37.0 34.0 40.0 29.0 41.0 30 35.49270555079603 37.0 34.0 40.0 29.0 41.0 31 35.30760938579113 37.0 34.0 40.0 27.0 41.0 32 35.058928627611984 37.0 34.0 40.0 26.0 41.0 33 34.79490850798147 37.0 33.0 40.0 25.0 41.0 34 34.470842576579464 37.0 33.0 40.0 23.0 41.0 35 34.178617941069824 37.0 33.0 40.0 23.0 41.0 36 33.9377002201874 36.0 33.0 40.0 21.0 41.0 37 33.83224701013976 36.0 33.0 40.0 21.0 41.0 38 33.72721467833504 36.0 33.0 40.0 20.0 41.0 39 33.66632349960259 36.0 33.0 40.0 20.0 41.0 40 33.5179463823813 36.0 33.0 40.0 18.0 41.0 41 33.43689688947253 36.0 33.0 40.0 18.0 41.0 42 33.358457254295566 36.0 32.0 40.0 18.0 41.0 43 33.24864723233872 35.0 32.0 40.0 18.0 41.0 44 33.08168287340178 35.0 32.0 40.0 18.0 41.0 45 33.001256445342825 35.0 32.0 40.0 18.0 41.0 46 32.908839629400205 35.0 32.0 40.0 18.0 41.0 47 32.867156178322396 35.0 31.0 40.0 18.0 41.0 48 32.73300226995729 35.0 31.0 39.0 18.0 41.0 49 32.63183882013799 35.0 31.0 39.0 18.0 41.0 50 32.48340238796825 35.0 31.0 39.0 17.0 41.0 51 32.15369379973107 35.0 31.0 39.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 6.0 12 6.0 13 10.0 14 35.0 15 102.0 16 275.0 17 711.0 18 1507.0 19 2809.0 20 4869.0 21 7728.0 22 11418.0 23 16512.0 24 23494.0 25 33973.0 26 45876.0 27 51946.0 28 52926.0 29 54963.0 30 61894.0 31 71547.0 32 85656.0 33 107299.0 34 159991.0 35 209321.0 36 164225.0 37 183710.0 38 245364.0 39 340577.0 40 49.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.666602021969226 23.288028747634492 27.364874100153546 18.680495130242733 2 35.34201257167438 24.167334174745964 27.905723273586847 12.58492997999281 3 26.914957321605137 24.358895669131932 35.486225263732315 13.23992174553062 4 24.375761745778192 26.802362075981932 35.11264424492844 13.70923193331143 5 21.784472171747208 30.854346728367965 33.84397486490376 13.517206234981069 6 20.766318187046338 38.73529182696747 30.51831465084385 9.980075335142354 7 83.24858172800434 3.555389588318153 11.641873877851436 1.554154805826069 8 84.0129193115546 2.8221020908261436 11.542070029807052 1.6229085678122017 9 78.98326957406194 5.386828883594672 13.051764413403527 2.5781371289398667 10 39.65539562296943 30.878588489908466 19.10947115307744 10.356544734044666 11 32.92644997970397 22.703286512348082 29.211683703811065 15.158579804136881 12 29.94971639717908 21.834038837365117 31.61883904656636 16.597405718889437 13 21.528334750874638 29.739689901449502 32.575305484879074 16.15666986279679 14 17.00301680985639 32.603776660135146 33.97880032164176 16.414406208366707 15 16.52643409361343 25.881845654251617 41.6329560042975 15.958764247837454 16 19.666567464564476 24.38896576908536 39.672622747127996 16.271844019222172 17 19.72603714766276 24.61116472380123 32.43196962249388 23.23082850604213 18 21.531790491349557 25.716228002535583 35.292549062488554 17.459432443626298 19 24.46669414066308 27.213440457849508 30.315560683576415 18.004304717910998 20 25.582692001198676 27.25516723462879 30.43707896057516 16.725061803597374 21 22.28411035056166 27.210500499535023 33.20693231854913 17.29845683135419 22 22.21210716096478 24.72226420115917 32.07685360503362 20.98877503284243 23 19.30139369497571 28.31907109696034 31.96822988204578 20.411305326018166 24 19.029009136049407 26.455240682008434 37.11522006103766 17.400530120904495 25 19.276997198787086 27.741034029759597 34.274652968867905 18.70731580258541 26 18.364269087679357 31.64158503984159 30.865074997305037 19.129070875174012 27 17.942359280442624 30.913197472873726 32.91499961574229 18.229443630941358 28 16.66017640781451 29.021927446986624 36.61021774775467 17.707678397444194 29 18.205975542641518 26.988095231954972 35.88693642417512 18.918992801228388 30 18.72572922571298 29.332015681840808 33.81870153904239 18.123553553403827 31 23.162538948000392 27.906548525043544 30.37977556255071 18.55113696440536 32 24.351004202077263 27.944819561347906 30.148034637866765 17.55614159870807 33 23.161507383679517 28.4493576706865 29.414747140374757 18.974387805259223 34 19.22428426199052 29.439865731587993 31.15164356564334 20.184206440778148 35 19.499402466367137 29.540288518224905 31.52197515683646 19.4383338585715 36 23.873957281889908 29.13096379570281 28.57092752590129 18.424151396505987 37 19.71102788679407 31.95471638944235 29.708330346094986 18.625925377668594 38 19.88458858378082 31.95466481122631 28.192394998357234 19.96835160663564 39 19.40573642603194 30.854088837287748 29.001502473433348 20.73867226324696 40 21.42992351466343 29.166707499421037 28.672897659019508 20.730471326896026 41 18.468818131599754 27.773992509811467 29.912167455899336 23.845021902689442 42 20.26528739639871 28.53771115476921 28.42176332510317 22.77523812372892 43 20.436733386527667 28.567884411154722 29.39808737659267 21.597294825724944 44 19.773953310367272 30.90200499999226 29.276156473865576 20.047885215774887 45 18.725522912848806 32.88957155523279 27.50274267163812 20.88216286028029 46 20.39737920768639 31.568034503763403 28.25330887150474 19.781277417045466 47 19.82192105128783 29.80834050700355 29.666500412883618 20.703238028825 48 20.45818992440181 28.451420799328247 31.002582521277304 20.08780675499264 49 20.413935815036393 27.82964540492252 30.91856160734226 20.837857172698826 50 19.06516546549598 30.943731776771543 29.78966919279576 20.201433564936718 51 18.222222680695253 32.06916845084312 28.45791965454974 21.250689213911883 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1546.0 1 2200.0 2 2854.0 3 27217.5 4 51581.0 5 34830.5 6 18080.0 7 18519.0 8 18958.0 9 21006.0 10 23054.0 11 24603.0 12 26152.0 13 26046.0 14 25940.0 15 24238.0 16 22536.0 17 20355.0 18 18174.0 19 16908.5 20 15643.0 21 15078.0 22 14513.0 23 14987.5 24 15462.0 25 16521.0 26 20760.0 27 23940.0 28 27551.5 29 31163.0 30 34796.5 31 38430.0 32 44049.0 33 49668.0 34 54689.5 35 59711.0 36 65262.5 37 70814.0 38 77736.5 39 84659.0 40 98979.0 41 113299.0 42 125196.5 43 137094.0 44 141715.5 45 146337.0 46 145205.0 47 144073.0 48 140490.0 49 136907.0 50 130275.0 51 123643.0 52 113719.0 53 103795.0 54 93677.5 55 83560.0 56 78023.5 57 72487.0 58 66793.5 59 61100.0 60 56180.0 61 51260.0 62 45896.5 63 40533.0 64 35541.0 65 30549.0 66 25759.5 67 20970.0 68 18566.0 69 16162.0 70 13656.5 71 11151.0 72 9251.0 73 7351.0 74 5687.5 75 3108.0 76 2192.0 77 1533.5 78 875.0 79 685.0 80 495.0 81 386.5 82 278.0 83 201.5 84 125.0 85 78.0 86 31.0 87 29.5 88 28.0 89 22.0 90 16.0 91 11.0 92 6.0 93 4.0 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1938803.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.103617335908304 #Duplication Level Percentage of deduplicated Percentage of total 1 79.87950953565162 20.85144149898688 2 6.439612381987005 3.361943548219315 3 2.5535760155036598 1.9997271344058296 4 1.4837331535007712 1.5492320987033852 5 0.9782215790812254 1.2767560885032136 6 0.6646593885560863 1.041000860255212 7 0.5193025845479483 0.9488973164011469 8 0.43057114881811015 0.89915716037043 9 0.3588286276057689 0.8430052665771121 >10 5.15109488129495 32.592819386672474 >50 1.2556166561843451 22.550574818978316 >100 0.28307963336999203 9.614709870233439 >500 0.0011969530355520365 0.22329619931839806 >1k 7.979686903680243E-4 0.3125001147643906 >5k 0.0 0.0 >10k+ 1.9949217259200607E-4 1.9349386376104751 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 37157 1.9164917735324323 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0315643208722082E-4 0.0 0.0 0.028161705959811285 0.0 2 1.0315643208722082E-4 0.0 0.0 0.08474300895965191 0.0 3 1.0315643208722082E-4 0.0 0.0 0.15978931330310506 0.0 4 1.0315643208722082E-4 0.0 0.0 0.24009659568300648 0.0 5 1.0315643208722082E-4 0.0 0.0 0.43464962659950496 0.0 6 1.0315643208722082E-4 0.0 0.0 0.8265924903149005 0.0 7 1.0315643208722082E-4 0.0 0.0 1.1098084746103654 0.0 8 1.0315643208722082E-4 0.0 0.0 1.5583326413256013 0.0 9 1.0315643208722082E-4 0.0 0.0 1.810859587075118 0.0 10 1.0315643208722082E-4 0.0 0.0 2.094952401043324 0.0 11 1.0315643208722082E-4 0.0 0.0 2.3375763293124674 0.0 12 1.0315643208722082E-4 0.0 0.0 2.524341049606381 0.0 13 1.0315643208722082E-4 0.0 0.0 2.6209470482560633 0.0 14 1.0315643208722082E-4 0.0 0.0 2.678817806656994 0.0 15 1.0315643208722082E-4 0.0 0.0 2.7271981733059008 0.0 16 1.0315643208722082E-4 0.0 0.0 2.814365358419602 0.0 17 1.0315643208722082E-4 0.0 0.0 2.910249262044674 0.0 18 1.0315643208722082E-4 0.0 0.0 3.0318706954755075 0.0 19 1.0315643208722082E-4 0.0 0.0 3.1006760356776835 0.0 20 1.0315643208722082E-4 0.0 0.0 3.1785591419035355 0.0 21 1.0315643208722082E-4 0.0 0.0 3.276454595954308 0.0 22 1.0315643208722082E-4 0.0 0.0 3.3860067268309364 0.0 23 1.0315643208722082E-4 0.0 0.0 3.507989207774075 0.0 24 1.0315643208722082E-4 0.0 0.0 3.603357329238711 0.0 25 1.0315643208722082E-4 0.0 0.0 3.6875845560379266 0.0 26 1.0315643208722082E-4 0.0 0.0 3.7698002324114417 0.0 27 1.0315643208722082E-4 0.0 0.0 3.8619705044813735 0.0 28 1.0315643208722082E-4 0.0 0.0 3.9539344636871308 0.0 29 1.0315643208722082E-4 0.0 0.0 4.059463493712357 0.0 30 1.0315643208722082E-4 0.0 0.0 4.187686938796773 0.0 31 1.0315643208722082E-4 0.0 0.0 4.300385340852062 0.0 32 1.0315643208722082E-4 0.0 0.0 4.413754259715917 0.0 33 1.0315643208722082E-4 0.0 0.0 4.527381069659992 0.0 34 1.0315643208722082E-4 0.0 0.0 4.647970938769952 0.0 35 1.0315643208722082E-4 0.0 0.0 4.789192094297357 0.0 36 1.0315643208722082E-4 0.0 0.0 4.907821991197662 0.0 37 1.0315643208722082E-4 0.0 0.0 5.03537491947351 0.0 38 1.0315643208722082E-4 0.0 0.0 5.185364371728329 0.0 39 1.0315643208722082E-4 0.0 0.0 5.406789653203549 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 17265 0.0 43.631626 1 GCGATAC 115 0.0 43.043476 9 CGTTAGG 370 0.0 41.959457 2 CGGTCTA 185 0.0 41.351353 31 TATAGCG 120 0.0 41.250004 1 CTCACGA 175 0.0 41.14286 24 GCGTTAG 225 0.0 41.0 1 TCACGAC 170 0.0 39.705883 25 GGCGATA 570 0.0 39.473682 8 GGGCGAT 3065 0.0 38.760197 7 CAATCGT 35 6.2505096E-6 38.57143 15 GTCGATG 100 0.0 38.25 1 ATAGCGG 330 0.0 38.181816 2 TTAGGGA 2280 0.0 38.092102 4 GTTTTTT 20515 0.0 37.673653 2 TCACGCG 60 1.5643309E-10 37.500004 1 ACGCGTT 30 1.140211E-4 37.500004 10 TTAGACG 90 0.0 37.5 1 CACGACG 180 0.0 37.5 26 TAAGGGA 2410 0.0 37.3444 4 >>END_MODULE