SRR1548163_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548163_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1602599
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40033	2.4980048034474	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTT	1983	0.12373650551385593	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCT	1703	0.10626488597584298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCG	30	2.1660398E-6	45.000004	1
CGCCGGT	60	0.0	45.000004	28
CGACGGT	55	1.8189894E-12	45.0	28
TAACGCC	45	3.8562575E-10	45.0	12
CGTTTTT	21995	0.0	44.069107	1
GCGATTC	50	1.0822987E-9	40.500004	9
TACGGGA	825	0.0	39.81818	4
ACGGGAT	820	0.0	39.786587	5
GTACGCG	40	3.459354E-7	39.375004	1
TAGGGCG	420	0.0	39.107143	5
GTTTTTT	25215	0.0	38.655563	2
AGTCGGC	35	6.249833E-6	38.571426	30
CGTTCGA	65	9.094947E-12	38.07692	14
TAGGGAT	2860	0.0	37.998253	5
AGGGCGA	1140	0.0	37.894737	6
ACTCGCC	30	1.1401226E-4	37.500004	42
ATAACGC	60	1.5643309E-10	37.500004	11
GCGCGAC	180	0.0	37.5	9
CGAGGGA	1160	0.0	37.43535	4
GGCACCG	555	0.0	37.2973	8