SRR1548162_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548162_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2235622
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	52519	2.349189621501309	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTT	2920	0.1306124201676312	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCT	2582	0.1154935852304191	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2294	0.10261126433717328	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	20	7.034718E-4	45.000004	21
CGTTCCG	20	7.034718E-4	45.000004	40
CGTACTC	20	7.034718E-4	45.000004	42
CCGGTCA	20	7.034718E-4	45.000004	31
CGTTTTT	23900	0.0	43.907955	1
ACGCGAG	80	0.0	42.187504	1
CGGGACG	150	0.0	40.5	6
ATACCGG	100	0.0	40.5	2
ACGGGAC	800	0.0	39.9375	5
AGGGCGA	2055	0.0	39.744526	6
TATAGCG	125	0.0	39.600002	1
GGGCGAT	3950	0.0	39.588608	7
ATAGCGG	385	0.0	39.155846	2
GGCGATC	555	0.0	38.91892	8
ACGTTCG	35	6.250939E-6	38.57143	13
CGTTCGA	35	6.250939E-6	38.57143	14
AGTTCGT	35	6.250939E-6	38.57143	28
TAACGGG	735	0.0	38.265305	3
GTTTTTT	27740	0.0	38.219177	2
GGACCGA	1005	0.0	38.0597	8