SRR1548152_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548152_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3006875
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	90872	3.022140927042195	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTT	5748	0.19116192059862813	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5015	0.1667844522968198	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCT	4717	0.15687383080440656	No Hit
CGTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	3550	0.11806277281230512	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAACG	65	0.0	45.000004	1
ACGCCCG	20	7.0351077E-4	45.0	35
CGACGTG	20	7.0351077E-4	45.0	15
GTCCTCG	20	7.0351077E-4	45.0	21
GTTCGCA	35	1.2128112E-7	45.0	20
GTCCGCC	20	7.0351077E-4	45.0	36
CCGGTGA	20	7.0351077E-4	45.0	18
GTGCGTA	20	7.0351077E-4	45.0	1
GTTGCGC	25	3.8923165E-5	45.0	35
TATCCGA	40	6.8212103E-9	45.0	34
CGCGGTA	30	2.1666783E-6	44.999996	40
CCGGTAT	30	2.1666783E-6	44.999996	30
TACGTAC	30	2.1666783E-6	44.999996	24
CGTTTTT	28775	0.0	44.280624	1
CGGTCTA	695	0.0	43.705036	31
CGACGGT	690	0.0	43.04348	28
CACGACG	700	0.0	42.750004	26
TCACGAC	710	0.0	42.46479	25
ACGGTCT	730	0.0	41.30137	30
GCGCGAA	60	3.6379788E-12	41.249996	20