##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548145_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4130173 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.093163409862008 31.0 31.0 33.0 30.0 34.0 2 31.473011178950614 31.0 31.0 34.0 30.0 34.0 3 31.41708664503884 31.0 31.0 34.0 30.0 34.0 4 35.31756877980656 37.0 35.0 37.0 33.0 37.0 5 35.214005563447344 37.0 35.0 37.0 32.0 37.0 6 35.27175496038544 37.0 35.0 37.0 32.0 37.0 7 35.7370006050594 37.0 35.0 37.0 35.0 37.0 8 35.740162215965285 37.0 35.0 37.0 35.0 37.0 9 37.45237645009059 39.0 37.0 39.0 35.0 39.0 10 36.76572482557026 39.0 37.0 39.0 32.0 39.0 11 36.47679770314706 39.0 35.0 39.0 32.0 39.0 12 36.126336838674796 38.0 35.0 39.0 31.0 39.0 13 35.98706010619894 38.0 35.0 39.0 31.0 39.0 14 36.98867577701951 39.0 35.0 41.0 31.0 41.0 15 37.15489375384518 39.0 35.0 41.0 31.0 41.0 16 37.20048240110039 39.0 35.0 41.0 32.0 41.0 17 37.04902385444871 39.0 35.0 41.0 31.0 41.0 18 36.858991378811496 39.0 35.0 40.0 31.0 41.0 19 36.704621089721904 38.0 35.0 40.0 31.0 41.0 20 36.505115645276845 38.0 35.0 40.0 31.0 41.0 21 36.36500359670164 38.0 35.0 40.0 30.0 41.0 22 36.29865455999059 38.0 35.0 40.0 30.0 41.0 23 36.224143153325535 38.0 35.0 40.0 30.0 41.0 24 36.06702818501792 38.0 35.0 40.0 30.0 41.0 25 35.95155965621779 38.0 34.0 40.0 30.0 41.0 26 35.88816400668931 38.0 34.0 40.0 30.0 41.0 27 35.85304199121926 38.0 34.0 40.0 30.0 41.0 28 35.81373855284028 38.0 34.0 40.0 30.0 41.0 29 35.78838683028532 38.0 34.0 40.0 29.0 41.0 30 35.65076813973652 38.0 34.0 40.0 29.0 41.0 31 35.46816222952404 38.0 34.0 40.0 27.0 41.0 32 35.19524194264986 38.0 34.0 40.0 26.0 41.0 33 34.903930900715295 38.0 34.0 40.0 24.0 41.0 34 34.577062026215366 38.0 33.0 40.0 23.0 41.0 35 34.28487983433139 38.0 33.0 40.0 22.0 41.0 36 34.12175712736488 37.0 33.0 40.0 21.0 41.0 37 34.03399567039928 37.0 33.0 40.0 20.0 41.0 38 33.931611097162275 37.0 33.0 40.0 19.0 41.0 39 33.85566294680635 37.0 33.0 40.0 18.0 41.0 40 33.73300561501903 37.0 33.0 40.0 18.0 41.0 41 33.63492473559824 37.0 33.0 40.0 18.0 41.0 42 33.56059104545984 37.0 33.0 40.0 18.0 41.0 43 33.44125318721516 37.0 32.0 40.0 18.0 41.0 44 33.28786978172585 37.0 32.0 40.0 18.0 41.0 45 33.20634583587661 36.0 32.0 40.0 18.0 41.0 46 33.090523568867454 36.0 31.0 40.0 18.0 41.0 47 33.063990297742976 36.0 31.0 40.0 18.0 41.0 48 32.942226148880444 36.0 31.0 40.0 17.0 41.0 49 32.828985613919805 36.0 31.0 40.0 17.0 41.0 50 32.707085635395906 35.0 31.0 40.0 15.0 41.0 51 32.38125691103012 35.0 31.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 1.0 12 16.0 13 35.0 14 67.0 15 215.0 16 510.0 17 1378.0 18 3026.0 19 6093.0 20 10017.0 21 15646.0 22 23619.0 23 34090.0 24 49642.0 25 71598.0 26 98793.0 27 114198.0 28 116692.0 29 118829.0 30 129975.0 31 149546.0 32 177481.0 33 218645.0 34 311408.0 35 384639.0 36 331858.0 37 400678.0 38 564197.0 39 797149.0 40 129.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.171714356759388 23.574363592033553 27.016713343484643 19.237208707722413 2 35.988613552023125 23.782320982680385 27.728814265165163 12.500251200131327 3 26.870811464798205 23.924615264300066 36.37097041697769 12.833602853924036 4 24.273147880246178 25.902014273978352 35.8869713205718 13.937866525203665 5 22.136820903143768 29.941191325399686 34.31999095437407 13.601996817082481 6 20.432776060470108 38.1858822862868 31.260530733216257 10.120810920026836 7 82.18537092756164 3.1876630833623674 12.817477621397458 1.8094883676785454 8 82.8977381819115 2.5341069248188877 12.676006549846702 1.8921483434229027 9 78.064332898404 5.163149340233448 14.071783433768998 2.700734327593542 10 35.935177533725586 34.75132881842964 19.389187813682383 9.924305834162395 11 27.798520788354388 22.12180942541632 33.831270506102285 16.248399280127007 12 27.450811382477198 20.762762237804566 34.55593748736433 17.230488892353904 13 22.771903259258146 24.530764207697835 34.41308632834508 18.28424620469893 14 17.312640414820397 28.42704167597822 35.2241419427225 19.036175966478886 15 16.82864131841451 26.416544779117 40.43106668897404 16.323747213494446 16 21.147395036479104 25.289424922394293 37.95172744579949 15.61145259532712 17 21.063936062726672 24.70371095835453 33.949255878627845 20.283097100290956 18 21.287025991405205 25.784513142669812 35.72479893699368 17.203661928931307 19 22.78911803452301 26.935336606965375 32.86421658366368 17.41132877484793 20 24.605022598326993 26.968725038878517 32.18124277118658 16.245009591607907 21 23.11404389113967 25.807345116052037 34.73469513262519 16.3439158601831 22 21.847172019186605 22.847735433842605 35.52810015464243 19.77699239232836 23 19.45548043629165 25.776765283197577 35.12511461384305 19.642639666667716 24 19.354104537509688 25.05430159947295 37.300374584793424 18.291219278223938 25 19.41233454385567 27.021773664202442 34.77249015961317 18.793401632328717 26 18.795604929866133 29.20475728256419 32.99159623579933 19.00804155177035 27 17.991716085500535 28.373896202410894 35.04453687533186 18.589850836756717 28 17.016865879468 27.747384915837664 37.10200517024347 18.133744034450856 29 18.35138624943798 25.776281041980564 36.4049157262904 19.467416982291056 30 19.50150756396887 26.43032144174106 35.29757712328273 18.77059387100734 31 21.65822109630759 26.06232232887097 33.02706690494563 19.252389669875814 32 22.288654736738632 26.380444596388575 32.70468331471829 18.626217352154498 33 21.435639620906922 27.212831036375473 32.32697516544707 19.02455417727054 34 19.005935102476336 27.418996734519354 33.83647609918519 19.73859206381912 35 18.822867710384045 27.591168699228824 33.38339580448567 20.20256778590146 36 20.95701560200989 27.947400750525464 32.062240492105296 19.033343155359354 37 19.687020374207084 29.39947067592568 31.697970036606215 19.215538913261017 38 19.659660745445773 29.080597834521704 30.920908155663213 20.338833264369313 39 19.293768081869693 28.870921387554464 31.286728183056738 20.548582347519098 40 20.84329155219406 27.1934129635732 31.20443138822514 20.7588640960076 41 18.752459037430153 27.5063780621296 31.11017383533329 22.630989065106956 42 20.13247386973863 28.269445371900886 29.839645942191765 21.758434816168716 43 20.259490340961506 27.766221899179527 30.170987994933867 21.803299764925104 44 19.909650273729454 28.762984020281955 30.343934745590563 20.983430960398028 45 19.505744674617745 29.561909392173163 29.804853210749283 21.12749272245981 46 20.31055357729567 29.34862534813917 29.977775749345128 20.363045325220032 47 19.932191702381473 28.376559529104473 30.77125340754491 20.91999536096914 48 19.79483668117534 27.315320689956568 31.972437958409976 20.917404670458115 49 19.857279586109346 26.51663743867388 32.15565062286737 21.470432352349405 50 19.039831987667345 28.173299278262675 32.08868006255428 20.698188671515698 51 18.528497474560993 28.58238625839644 31.43870728901671 21.45040897802586 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2692.0 1 4248.5 2 5805.0 3 58415.0 4 111025.0 5 78073.0 6 45121.0 7 44249.5 8 43378.0 9 44625.0 10 45872.0 11 45713.5 12 45555.0 13 44349.5 14 43144.0 15 40320.5 16 37497.0 17 35196.0 18 32895.0 19 30898.0 20 28901.0 21 29346.0 22 29791.0 23 30211.0 24 30631.0 25 35541.0 26 47175.0 27 53899.0 28 61004.5 29 68110.0 30 78282.5 31 88455.0 32 101405.0 33 114355.0 34 126516.0 35 138677.0 36 150873.5 37 163070.0 38 176026.5 39 188983.0 40 213680.0 41 238377.0 42 259475.5 43 280574.0 44 296894.0 45 313214.0 46 317517.0 47 321820.0 48 314159.0 49 306498.0 50 295110.5 51 283723.0 52 259066.0 53 234409.0 54 211177.5 55 187946.0 56 173066.5 57 158187.0 58 147027.5 59 135868.0 60 122698.0 61 109528.0 62 94371.5 63 79215.0 64 65836.5 65 52458.0 66 41513.5 67 30569.0 68 23992.5 69 17416.0 70 14056.0 71 10696.0 72 7832.0 73 4968.0 74 4229.0 75 2428.0 76 1366.0 77 1020.5 78 675.0 79 586.5 80 498.0 81 346.5 82 195.0 83 148.5 84 102.0 85 63.5 86 25.0 87 22.5 88 20.0 89 17.5 90 15.0 91 9.5 92 4.0 93 4.5 94 5.0 95 3.5 96 2.0 97 2.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4130173.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.59719524313824 #Duplication Level Percentage of deduplicated Percentage of total 1 81.66882996043906 20.08824155815577 2 6.054400608746867 2.978425477070434 3 2.128706320367401 1.5708061493213799 4 1.2003209073011394 1.1809811084522783 5 0.797816831703221 0.9812028188833043 6 0.5959845097639932 0.8795728409130581 7 0.45732331123261827 0.787420954293903 8 0.3631642356636449 0.7146257287954992 9 0.3237705092806102 0.7167461787670922 >10 4.389953626768709 27.02080143411014 >50 1.6250659755808305 28.19086485845824 >100 0.3909680812468471 12.17850809272156 >500 0.002396835830321876 0.41850992177822777 >1k 0.001198417915152175 0.605791699296686 >5k 0.0 0.0 >10k+ 9.986815959601459E-5 1.6875011789824073 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 68696 1.6632717322010482 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTT 4415 0.10689624865592798 TruSeq Adapter, Index 27 (95% over 21bp) >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.684824340287925E-5 0.0 0.0 0.045736582947009725 0.0 2 9.684824340287925E-5 0.0 0.0 0.1472819661549286 0.0 3 9.684824340287925E-5 0.0 0.0 0.2706424161893461 0.0 4 9.684824340287925E-5 0.0 0.0 0.38330113532774535 0.0 5 9.684824340287925E-5 0.0 0.0 0.6861940165702503 0.0 6 9.684824340287925E-5 0.0 0.0 1.2221764076226347 0.0 7 9.684824340287925E-5 0.0 0.0 1.5786263674669319 0.0 8 9.684824340287925E-5 0.0 0.0 2.1370049148062322 0.0 9 9.684824340287925E-5 0.0 0.0 2.4518827661698435 0.0 10 9.684824340287925E-5 0.0 0.0 2.800439594176806 0.0 11 9.684824340287925E-5 0.0 0.0 3.0870861825884774 0.0 12 9.684824340287925E-5 0.0 0.0 3.30782754136449 0.0 13 9.684824340287925E-5 0.0 0.0 3.4192030212778013 0.0 14 9.684824340287925E-5 0.0 0.0 3.4875052449376818 0.0 15 9.684824340287925E-5 0.0 0.0 3.55471792585928 0.0 16 9.684824340287925E-5 0.0 0.0 3.6623163242798786 0.0 17 9.684824340287925E-5 0.0 0.0 3.79487735743757 0.0 18 9.684824340287925E-5 0.0 0.0 3.957243437502497 0.0 19 9.684824340287925E-5 0.0 0.0 4.05588337340833 0.0 20 9.684824340287925E-5 0.0 0.0 4.169195818189698 0.0 21 9.684824340287925E-5 0.0 0.0 4.302483213172911 0.0 22 9.684824340287925E-5 0.0 0.0 4.455237105080102 0.0 23 9.684824340287925E-5 0.0 0.0 4.617530548962477 0.0 24 9.684824340287925E-5 0.0 0.0 4.747355619244036 0.0 25 0.0017674804421025463 0.0 0.0 4.858416342366288 0.0 26 0.0017674804421025463 0.0 0.0 4.9695981257927935 0.0 27 0.0017674804421025463 0.0 0.0 5.0852591404766825 0.0 28 0.0017674804421025463 0.0 0.0 5.208982771423861 0.0 29 0.0017674804421025463 0.0 0.0 5.342197530224521 0.0 30 0.0017674804421025463 0.0 0.0 5.511560895875306 0.0 31 0.0017674804421025463 0.0 0.0 5.662305186731888 0.0 32 0.0017674804421025463 0.0 0.0 5.808400761905131 0.0 33 0.0017674804421025463 0.0 0.0 5.95268043251457 0.0 34 0.0017674804421025463 0.0 0.0 6.108242923480445 0.0 35 0.0017674804421025463 0.0 0.0 6.271383789492595 0.0 36 0.0017674804421025463 0.0 0.0 6.433047719792851 0.0 37 0.0017674804421025463 0.0 0.0 6.60219317689598 0.0 38 0.0017674804421025463 0.0 0.0 6.7956475430932315 0.0 39 0.0017674804421025463 0.0 0.0 7.027478025738874 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 38570 0.0 43.82162 1 CGACGGT 420 0.0 41.785713 28 TATCGCG 120 0.0 41.249996 1 TACGGGA 1875 0.0 40.440002 4 CGTTAGG 550 0.0 38.863636 2 ACGGGAT 2080 0.0 38.617786 5 TAGGGAC 4870 0.0 38.16222 5 CGGTCTA 460 0.0 38.152172 31 GTTTTTT 46005 0.0 37.654057 2 AGGGATC 5085 0.0 37.61062 6 CGACGTA 30 1.1404348E-4 37.499996 29 GACCGAT 1340 0.0 37.444027 9 GGGCGAT 4035 0.0 37.360596 7 AAGGGAT 7245 0.0 37.36025 5 GACGGTC 470 0.0 37.340427 29 TTAGGGA 5780 0.0 37.292385 4 AGGGATT 8710 0.0 37.224453 6 CGGGATC 1270 0.0 37.204723 6 CACGACG 485 0.0 37.113403 26 TAGGGAT 6715 0.0 36.9583 5 >>END_MODULE