##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548140_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2305609 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.1059667966251 31.0 31.0 33.0 30.0 34.0 2 31.47164588618452 31.0 31.0 34.0 30.0 34.0 3 31.377259110282793 31.0 31.0 34.0 30.0 34.0 4 35.29709677573257 37.0 35.0 37.0 33.0 37.0 5 35.19519007776253 37.0 35.0 37.0 32.0 37.0 6 35.27027913232469 37.0 35.0 37.0 32.0 37.0 7 35.73966661302936 37.0 35.0 37.0 35.0 37.0 8 35.74890495309482 37.0 35.0 37.0 35.0 37.0 9 37.48352647825369 39.0 37.0 39.0 35.0 39.0 10 36.79091337689955 39.0 37.0 39.0 32.0 39.0 11 36.472954434164684 39.0 35.0 39.0 32.0 39.0 12 35.92046960260825 37.0 35.0 39.0 31.0 39.0 13 35.67282830696792 37.0 35.0 39.0 30.0 39.0 14 36.63442804048735 39.0 35.0 41.0 31.0 41.0 15 36.87635544448343 39.0 35.0 41.0 31.0 41.0 16 36.979833961439255 39.0 35.0 41.0 31.0 41.0 17 36.838391071512994 38.0 35.0 41.0 31.0 41.0 18 36.66824340120116 38.0 35.0 40.0 31.0 41.0 19 36.49087681389169 38.0 35.0 40.0 31.0 41.0 20 36.24260661716709 37.0 35.0 40.0 31.0 41.0 21 36.10298667293544 37.0 34.0 40.0 30.0 41.0 22 36.041760766894996 37.0 34.0 40.0 30.0 41.0 23 35.97539825703318 37.0 34.0 40.0 30.0 41.0 24 35.78569263045035 37.0 34.0 40.0 30.0 41.0 25 35.62649477860296 37.0 34.0 40.0 30.0 41.0 26 35.534079282306756 36.0 34.0 40.0 30.0 41.0 27 35.44996267797359 36.0 34.0 40.0 29.0 41.0 28 35.41865728317334 36.0 34.0 40.0 29.0 41.0 29 35.37912239239177 36.0 34.0 40.0 29.0 41.0 30 35.229183699404366 36.0 34.0 40.0 28.0 41.0 31 34.99926917356759 36.0 34.0 40.0 27.0 41.0 32 34.68287554394522 36.0 33.0 40.0 25.0 41.0 33 34.368580275319886 36.0 33.0 40.0 23.0 41.0 34 34.04723610985211 36.0 33.0 40.0 22.0 41.0 35 33.76386282322805 36.0 33.0 40.0 21.0 41.0 36 33.531031497534926 36.0 33.0 40.0 19.0 41.0 37 33.41242378911602 35.0 33.0 40.0 18.0 41.0 38 33.30752699178395 35.0 32.0 40.0 18.0 41.0 39 33.25902614016513 35.0 32.0 40.0 18.0 41.0 40 33.14527484929145 35.0 32.0 40.0 18.0 41.0 41 33.04806235575937 35.0 32.0 40.0 18.0 41.0 42 32.98529889499911 35.0 32.0 40.0 18.0 41.0 43 32.87187766876344 35.0 32.0 40.0 17.0 41.0 44 32.73363783711809 35.0 31.0 40.0 17.0 41.0 45 32.65602667234557 35.0 31.0 40.0 17.0 41.0 46 32.55266916463286 35.0 31.0 39.0 17.0 41.0 47 32.52150342924581 35.0 31.0 39.0 17.0 41.0 48 32.397123276323086 35.0 31.0 39.0 17.0 41.0 49 32.28330736044143 35.0 31.0 39.0 15.0 41.0 50 32.13565136152747 35.0 31.0 39.0 15.0 41.0 51 31.816175682867303 35.0 30.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 4.0 12 11.0 13 17.0 14 36.0 15 99.0 16 329.0 17 874.0 18 1849.0 19 3644.0 20 6307.0 21 9928.0 22 14630.0 23 21520.0 24 30775.0 25 44179.0 26 59007.0 27 66614.0 28 67176.0 29 69729.0 30 75910.0 31 87844.0 32 105241.0 33 131390.0 34 197618.0 35 259622.0 36 196205.0 37 206617.0 38 275243.0 39 373114.0 40 73.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.35740231756555 22.62369725309018 27.39254574387938 19.626354685464882 2 36.72990520075173 23.77736207657066 27.4558262047034 12.03690651797421 3 26.506272312434586 23.972538275136852 36.91237326016684 12.608816152261722 4 23.954538692380194 25.217025089683464 37.16675290563144 13.661683312304906 5 21.61641457853435 29.954515271236364 35.569647759008575 12.859422391220715 6 20.175450390764436 37.88452421898075 32.29493812697643 9.645087263278379 7 80.91150754529497 3.536722835485115 13.807588363855277 1.7441812553646348 8 81.89805817031423 2.8609360910718165 13.407824136703145 1.8331816019108185 9 77.4243160917571 5.1999276546890645 14.747340073707207 2.628416179846626 10 41.24684627792484 28.252578819739167 20.4478296189857 10.0527452833503 11 33.75476934727441 21.52017102639693 30.219998273774955 14.505061352553708 12 31.351456383107458 21.124527185658973 32.00846283996983 15.515553591263739 13 22.123829322317878 29.184219874228457 32.63879521636149 16.053155587092174 14 16.5267397897909 32.87912217552933 34.124259577404494 16.469878457275282 15 15.894325533947864 27.007181182932577 42.959105381701754 14.139387901417802 16 19.708979276191236 24.690266215997596 40.619549975733094 14.981204532078078 17 19.9106179755544 24.773584766541074 32.318792995690075 22.997004262214453 18 21.35301345544713 26.67555513532433 35.471278954931215 16.50015245429732 19 23.68250644406749 28.381525228258564 30.921504903910417 17.014463423763527 20 24.908256343551745 28.257089558550476 30.648561833337745 16.18609226456004 21 21.54133680081922 28.907373279684457 33.0792862102811 16.472003709215223 22 21.001999905447974 25.061794953090484 33.86103194427156 20.075173197189983 23 18.795511294412886 28.748369736585865 32.632939930404504 19.823179038596745 24 19.564245281832264 26.566560071547258 36.99014013217332 16.87905451444716 25 18.161275394049902 28.19302839293219 35.109509027766634 18.536187185251272 26 17.39874367249607 32.496880433759586 31.470643981698544 18.633731912045796 27 17.115608067109385 31.832977751214536 34.058637002197685 16.992777179478395 28 15.907207163053233 29.327956301350316 37.63591311449599 17.128923421100456 29 17.504702662073232 27.635084699964303 36.738492953488645 18.12171968447382 30 18.60432536479516 29.663832852838446 34.78248046394683 16.94936131841956 31 24.04588115330917 27.77630552274909 31.205507959068512 16.97230536487323 32 24.806374367900194 28.42689285130306 30.860653302446337 15.906079478350405 33 23.611245445346544 29.530722685416304 30.23231606052891 16.625715808708243 34 18.84890282784288 30.480753675059386 31.6641286532105 19.006214843887236 35 18.9439753227889 30.488430605536326 31.903414672652648 18.664179399022125 36 23.782696892664802 29.771960466844117 29.596258515645975 16.849084124845106 37 19.738168960999026 32.69092894762295 30.240209853448697 17.33069223792933 38 19.183738439605328 33.2359476389969 28.204999199777586 19.37531472162019 39 19.603540756476924 31.71405038755487 30.20455766784394 18.477851188124266 40 21.720725413545836 29.290525843714178 28.659326017551113 20.329422725188877 41 18.151993681495863 28.37393504275877 30.58129110356526 22.892780172180103 42 20.366939927802154 29.484444240111827 28.36074980623341 21.787866025852605 43 20.303789584443848 30.30800105308402 28.72755094207214 20.66065842039999 44 19.3119908883076 31.991590941915998 29.37280345453197 19.32361471524443 45 18.63564030154289 34.417631090093764 27.19220821917333 19.754520389190013 46 20.646432244148944 32.497617766065275 27.974951520400896 18.880998469384878 47 19.59994083992559 30.581421221030975 29.109402331444752 20.709235607598686 48 20.54619842306306 29.16643715391465 30.822528884993076 19.464835538029217 49 19.87817535410384 28.11257242663435 31.16521491718674 20.84403730207507 50 18.46553340137031 31.593778476749527 30.126790795837454 19.813897326042706 51 17.68001426087424 33.13848965717951 28.78024851568501 20.401247566261237 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1738.0 1 2780.0 2 3822.0 3 41548.0 4 79274.0 5 52487.5 6 25701.0 7 26093.0 8 26485.0 9 29825.5 10 33166.0 11 35801.0 12 38436.0 13 38607.5 14 38779.0 15 35708.5 16 32638.0 17 28842.0 18 25046.0 19 23085.5 20 21125.0 21 19529.0 22 17933.0 23 17283.0 24 16633.0 25 18147.0 26 21877.5 27 24094.0 28 27899.0 29 31704.0 30 36758.5 31 41813.0 32 46741.0 33 51669.0 34 57361.0 35 63053.0 36 69163.0 37 75273.0 38 85548.0 39 95823.0 40 111976.0 41 128129.0 42 147556.5 43 166984.0 44 171332.0 45 175680.0 46 177560.5 47 179441.0 48 173150.5 49 166860.0 50 158223.5 51 149587.0 52 136808.0 53 124029.0 54 114889.0 55 105749.0 56 96555.0 57 87361.0 58 80680.0 59 73999.0 60 66164.5 61 58330.0 62 51123.5 63 43917.0 64 37730.5 65 31544.0 66 26067.5 67 20591.0 68 16335.0 69 12079.0 70 9707.5 71 7336.0 72 5900.5 73 4465.0 74 3579.5 75 2000.0 76 1306.0 77 1120.5 78 935.0 79 665.5 80 396.0 81 270.5 82 145.0 83 103.0 84 61.0 85 42.0 86 23.0 87 30.5 88 38.0 89 33.5 90 29.0 91 30.5 92 32.0 93 17.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2305609.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.167908067569513 #Duplication Level Percentage of deduplicated Percentage of total 1 79.89501164271326 20.906853197239165 2 6.997963559788833 3.662441341855114 3 2.8808793794888135 2.2615976026865994 4 1.681755245920961 1.7603206666964986 5 1.0584543703653688 1.3848768328719074 6 0.7628245112911076 1.197691300989261 7 0.5685338698245359 1.0414139427207592 8 0.4148129115271478 0.86838289072666 9 0.3441224227208224 0.8104467529572995 >10 3.6254734166678904 22.381607659488132 >50 1.3087487349786944 24.4427862177825 >100 0.4578886864751431 15.738055312882892 >500 0.002186010813662487 0.3747698166665319 >1k 0.0011770827458182623 0.5735293871588092 >5k 0.0 0.0 >10k+ 1.6815467797403748E-4 2.5952270772778427 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 58979 2.5580660033856564 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCT 2732 0.11849363877396385 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTT 2719 0.1179297964225504 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2309 0.10014707610874177 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02997038960205308 0.0 2 0.0 0.0 0.0 0.09971335122303912 0.0 3 0.0 0.0 0.0 0.19053534228917393 0.0 4 0.0 0.0 0.0 0.2795356888353576 0.0 5 0.0 0.0 0.0 0.5372983884084422 0.0 6 0.0 0.0 0.0 1.0170848569727131 0.0 7 0.0 0.0 0.0 1.4234417023875254 0.0 8 0.0 0.0 0.0 1.9989946257149414 0.0 9 0.0 0.0 0.0 2.348446766125566 0.0 10 0.0 0.0 0.0 2.7136864923757673 0.0 11 0.0 0.0 0.0 2.995390805639638 0.0 12 0.0 0.0 0.0 3.2123399934681034 0.0 13 0.0 0.0 0.0 3.3221157620394437 0.0 14 0.0 0.0 0.0 3.3814493264035663 0.0 15 0.0 0.0 0.0 3.4403491658819862 0.0 16 0.0 0.0 0.0 3.537243305347958 0.0 17 0.0 0.0 0.0 3.650705735447771 0.0 18 0.0 0.0 0.0 3.8075840266064196 0.0 19 0.0 0.0 0.0 3.8979722927868514 0.0 20 0.0 0.0 0.0 3.995126667184245 0.0 21 0.0 0.0 0.0 4.1093264295897525 0.0 22 0.0 0.0 0.0 4.235670488794934 0.0 23 0.0 0.0 0.0 4.379233425962512 0.0 24 0.0 0.0 0.0 4.486536962685347 0.0 25 0.0 0.0 0.0 4.585816589022683 0.0 26 0.0 0.0 0.0 4.684835980428598 0.0 27 0.0 0.0 0.0 4.7866312111030105 0.0 28 0.0 0.0 0.0 4.89952979885141 0.0 29 0.0 0.0 0.0 5.019845082145324 0.0 30 0.0 0.0 0.0 5.177807685518229 0.0 31 0.0 0.0 0.0 5.30874922851186 0.0 32 0.0 0.0 0.0 5.440428103811184 0.0 33 0.0 0.0 0.0 5.573451526256187 0.0 34 0.0 0.0 0.0 5.717578305775177 0.0 35 0.0 0.0 0.0 5.879748040539398 0.0 36 0.0 0.0 0.0 6.023310977706974 0.0 37 0.0 0.0 0.0 6.185957809845468 0.0 38 0.0 0.0 0.0 6.377013621997485 0.0 39 0.0 0.0 0.0 6.627533115979336 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGTACG 35 1.2126475E-7 45.000004 1 CGAATCG 20 7.034767E-4 45.0 23 CCGACGT 20 7.034767E-4 45.0 43 AATCGTC 30 2.1664564E-6 44.999996 35 CGTTTTT 23900 0.0 44.143307 1 CGACGGT 395 0.0 41.58228 28 GACCGAT 520 0.0 41.53846 9 TATAGCG 240 0.0 41.249996 1 CACGACG 405 0.0 40.0 26 TCACGAC 410 0.0 39.512196 25 CTCACGA 430 0.0 39.244183 24 AGGGCGA 1365 0.0 39.230766 6 ATTAGCG 150 0.0 39.0 1 CGTTAGG 360 0.0 38.750004 2 GTTTTTT 27920 0.0 38.60942 2 TAGGGAC 1995 0.0 38.458645 5 GTTAGCG 130 0.0 38.07692 1 TACGGGA 615 0.0 38.04878 4 GTAGGGC 750 0.0 37.8 4 ATAGCGG 405 0.0 37.777775 2 >>END_MODULE