SRR1548139_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548139_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2211726
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8551	0.3866211275718602	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3216	0.14540679993814784	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGA	25	3.89198E-5	45.0	22
GTCGATC	20	7.034704E-4	45.0	29
CGACATA	35	1.2126111E-7	45.0	15
ACTCGCG	20	7.034704E-4	45.0	39
CGACTCG	25	3.89198E-5	45.0	36
TATCCGC	20	7.034704E-4	45.0	28
TGCCCCG	30	2.1664164E-6	44.999996	26
ATTCGAC	30	2.1664164E-6	44.999996	12
CGACGGT	370	0.0	42.567566	28
CGTTTTT	5505	0.0	41.77112	1
TATCGCT	65	0.0	41.53846	11
AGGGCGA	1330	0.0	40.770676	6
GCGATAC	105	0.0	40.714287	9
TACGGGA	970	0.0	40.360825	4
TCTAGCG	145	0.0	40.34483	1
TGATCGG	45	1.9297659E-8	40.000004	2
ATTACGC	45	1.9297659E-8	40.000004	42
TACGTCA	45	1.9297659E-8	40.000004	19
CACGACG	395	0.0	39.873417	26
CGCATGG	215	0.0	39.76744	2