##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548139_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2211726 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.15383958049053 31.0 31.0 33.0 30.0 34.0 2 31.539066321958508 31.0 31.0 34.0 30.0 34.0 3 31.672415570463972 31.0 31.0 34.0 30.0 34.0 4 35.47400310888419 37.0 35.0 37.0 33.0 37.0 5 35.32147426941673 37.0 35.0 37.0 33.0 37.0 6 35.36893132331944 37.0 35.0 37.0 33.0 37.0 7 35.77171901040183 37.0 35.0 37.0 35.0 37.0 8 35.76743683439992 37.0 35.0 37.0 35.0 37.0 9 37.49488905949471 39.0 37.0 39.0 35.0 39.0 10 36.82100856977763 39.0 37.0 39.0 32.0 39.0 11 36.49087409561582 39.0 35.0 39.0 32.0 39.0 12 35.74583741385687 37.0 35.0 39.0 31.0 39.0 13 35.38989684979062 37.0 35.0 39.0 30.0 39.0 14 36.27682995090712 38.0 35.0 40.0 30.0 41.0 15 36.609943998488056 38.0 35.0 40.0 31.0 41.0 16 36.75748080910565 38.0 35.0 40.0 31.0 41.0 17 36.649948953893926 38.0 35.0 40.0 31.0 41.0 18 36.60266145083071 38.0 35.0 40.0 31.0 41.0 19 36.5516298130962 38.0 35.0 40.0 31.0 41.0 20 36.42661568385957 38.0 35.0 40.0 31.0 41.0 21 36.278479341473584 38.0 35.0 40.0 30.0 41.0 22 36.17554073153727 38.0 34.0 40.0 30.0 41.0 23 36.17737866263723 38.0 34.0 40.0 30.0 41.0 24 36.03052548100443 38.0 34.0 40.0 30.0 41.0 25 35.92882753107754 37.0 34.0 40.0 30.0 41.0 26 35.88826870959603 37.0 34.0 40.0 30.0 41.0 27 35.87632373992077 37.0 34.0 40.0 30.0 41.0 28 35.907998549549085 37.0 34.0 40.0 30.0 41.0 29 35.97251467858134 38.0 35.0 40.0 30.0 41.0 30 35.9314874446473 37.0 35.0 40.0 30.0 41.0 31 35.77661654291716 37.0 34.0 40.0 30.0 41.0 32 35.641896871493124 37.0 34.0 40.0 29.0 41.0 33 35.540438553419364 37.0 34.0 40.0 29.0 41.0 34 35.43566382092538 37.0 34.0 40.0 29.0 41.0 35 35.303461188230365 37.0 34.0 40.0 28.0 41.0 36 35.1335518052417 37.0 34.0 40.0 27.0 41.0 37 35.04877457695935 37.0 34.0 40.0 27.0 41.0 38 34.98414903111868 37.0 34.0 40.0 27.0 41.0 39 34.97013825401519 37.0 34.0 40.0 27.0 41.0 40 34.84321746907167 37.0 34.0 40.0 26.0 41.0 41 34.79708924161492 37.0 34.0 40.0 26.0 41.0 42 34.75200137810922 37.0 33.0 40.0 26.0 41.0 43 34.67025255388778 36.0 33.0 40.0 26.0 41.0 44 34.544955839918686 36.0 33.0 40.0 25.0 41.0 45 34.462278781368035 36.0 33.0 40.0 25.0 41.0 46 34.37096683766434 36.0 33.0 40.0 24.0 41.0 47 34.33320040547518 36.0 33.0 40.0 24.0 41.0 48 34.238672873583795 36.0 33.0 40.0 24.0 41.0 49 34.14976674325843 36.0 33.0 40.0 24.0 41.0 50 33.997955442943656 35.0 33.0 40.0 24.0 41.0 51 33.624433587162244 35.0 32.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 1.0 11 4.0 12 4.0 13 10.0 14 24.0 15 61.0 16 218.0 17 501.0 18 1017.0 19 1966.0 20 3386.0 21 5461.0 22 8252.0 23 12211.0 24 17485.0 25 24169.0 26 32258.0 27 39720.0 28 45823.0 29 53878.0 30 66208.0 31 81399.0 32 102002.0 33 131749.0 34 211529.0 35 272883.0 36 169226.0 37 211414.0 38 298351.0 39 420448.0 40 65.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.94380678257614 23.610790848414315 29.826117701740635 12.619284667268913 2 29.774935954996234 25.555425943358262 30.737623014785736 13.932015086859764 3 28.999387808435586 25.172195832576005 32.11265771619088 13.715758642797526 4 27.03612472792742 27.59455737283913 30.426327673500243 14.942990225733205 5 23.889803709862793 32.437652765306375 29.42855489332765 14.243988631503179 6 22.641683463503163 40.85352344729862 25.909628950421528 10.595164138776685 7 88.95658865519508 3.787901394657385 5.691075657653796 1.5644342924937358 8 90.28197887080044 2.787144519709946 5.352154832922342 1.57872177656726 9 85.21186620765863 5.81016816730463 6.554157250943381 2.423808374093355 10 46.39946358635744 32.58563673800462 12.078575736777521 8.936323938860419 11 39.94468573412801 20.925150764606464 24.061208305187893 15.068955196077633 12 37.13665255099411 21.22279161161916 26.481535235377258 15.159020602009472 13 24.407408512627697 33.4223136138925 26.21391619034184 15.956361683137965 14 17.10596158837035 37.32713726745537 28.901455243551872 16.665445900622412 15 15.773924979857359 26.804224393075813 43.07807567483495 14.343774952231877 16 20.81867283741295 22.92865391101791 40.08638502237619 16.166288229192947 17 20.80931363107365 22.766111172902974 28.726117068750828 27.698458127272545 18 23.13537029451207 25.85519182755911 32.47364275683335 18.535795121095468 19 27.088617667830462 26.32532239526958 28.01671635636602 18.569343580533936 20 29.709511937735506 26.650995647742988 26.803003627031558 16.83648878748995 21 24.883055134315914 26.50215261745804 30.05684248410517 18.557949764120874 22 23.342357959349393 23.40167814638884 29.716022689971545 23.539941204290223 23 20.209465367771596 27.176422395902566 29.131727890344468 23.482384345981373 24 21.18137599322882 24.595632551229222 36.58382638717454 17.639165068367422 25 18.987388130356113 26.462816822698652 33.52481274805288 21.024982298892358 26 18.282599200805162 33.39812436079333 28.278186357622957 20.04109008077854 27 18.129686950372694 32.628680044453965 31.13803427730198 18.103598727871358 28 16.383629798627858 28.662818088678254 37.17738996602653 17.776162146667353 29 18.028046873799013 26.245430039706548 36.18820776172094 19.538315324773503 30 20.035574026800788 28.81383136970854 32.15493239216793 18.995662211322742 31 26.229424440459624 27.186776300500153 27.940395871821373 18.64340338721885 32 26.97133370046742 27.583480051326433 27.77663236766218 17.668553880543975 33 26.00177417998432 28.436840729819156 26.8512464925583 18.710138597638224 34 20.184281416414148 28.608833101387788 29.2593205487479 21.947564933450163 35 19.892608758951155 27.634933079413997 31.159465503412264 21.312992658222583 36 26.280696614318412 26.429630071717746 29.11129136249246 18.178381951471383 37 20.73453040747362 31.348412958928908 29.664072312754836 18.252984320842636 38 20.27344255120209 31.734808018714794 26.625178706584812 21.3665707234983 39 20.50439340135261 30.246377715865346 29.227444990925637 20.02178389185641 40 23.559111752540776 27.014783928931525 28.013958329377147 21.412145989150556 41 19.114664293859185 26.138590404055474 29.130235842957035 25.616509459128302 42 21.864778910226672 25.783166630947957 27.66038831211461 24.69166614671076 43 21.94616331317713 26.142252702188244 27.711479631744616 24.200104352890005 44 19.480577612235876 30.39956124764098 29.146377082875546 20.9734840572476 45 18.898769558254504 34.11082566285336 26.121092757421128 20.869312021471014 46 21.860393195178787 30.8974077259118 27.453852782849232 19.78834629606018 47 21.14479822545831 28.608064470915473 28.1354471575593 22.111690146066916 48 22.31420166874197 26.042692449245518 31.083190232424812 20.559915649587698 49 21.420872205689133 25.114819828495932 31.753616858507787 21.710691107307145 50 19.60988838581271 31.145584941353494 29.006305482686372 20.238221190147424 51 19.37699335270282 32.13200911867021 26.972237971611314 21.518759557015652 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 835.0 1 1798.0 2 2761.0 3 8766.5 4 14772.0 5 10849.0 6 6926.0 7 7106.5 8 7287.0 9 7897.5 10 8508.0 11 8407.5 12 8307.0 13 8077.5 14 7848.0 15 7600.5 16 7353.0 17 7187.0 18 7021.0 19 6897.0 20 6773.0 21 7241.5 22 7710.0 23 10186.5 24 12663.0 25 15507.0 26 21919.5 27 25488.0 28 31178.0 29 36868.0 30 40028.5 31 43189.0 32 52945.5 33 62702.0 34 70318.5 35 77935.0 36 86310.0 37 94685.0 38 103764.0 39 112843.0 40 134961.0 41 157079.0 42 181048.5 43 205018.0 44 208815.5 45 212613.0 46 201186.0 47 189759.0 48 180094.0 49 170429.0 50 162979.0 51 155529.0 52 144580.5 53 133632.0 54 118548.5 55 103465.0 56 95180.5 57 86896.0 58 77683.0 59 68470.0 60 60635.5 61 52801.0 62 45401.0 63 38001.0 64 31194.0 65 24387.0 66 20481.5 67 16576.0 68 13593.5 69 10611.0 70 8479.0 71 6347.0 72 5618.5 73 4890.0 74 3474.0 75 1679.0 76 1300.0 77 926.5 78 553.0 79 381.5 80 210.0 81 176.5 82 143.0 83 107.5 84 72.0 85 47.0 86 22.0 87 19.5 88 17.0 89 14.0 90 11.0 91 11.5 92 12.0 93 6.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2211726.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.007089889202515 #Duplication Level Percentage of deduplicated Percentage of total 1 82.57462466632049 14.869286889335923 2 7.017006419901114 2.52711730712541 3 2.0658768982592046 1.1160129302094113 4 0.9817777204502793 0.7071583865345806 5 0.5694026842460628 0.5126642659186024 6 0.38052529160513876 0.411129187862924 7 0.2612830832762434 0.3293463576958311 8 0.2208932176290705 0.31821152206094766 9 0.18391057964936044 0.2980524905389235 >10 2.602810212216933 12.131981440315538 >50 1.534228013412615 20.287099714709782 >100 1.6023612310135569 45.45344585997803 >500 0.0047952218276232075 0.5037269087244719 >1k 2.5238009619069513E-4 0.1461553354797818 >5k 2.5238009619069513E-4 0.38861140350983026 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8551 0.3866211275718602 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3216 0.14540679993814784 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.521355719469772E-5 0.0 0.0 0.023511049741242813 0.0 2 4.521355719469772E-5 0.0 0.0 0.08201739275118165 0.0 3 4.521355719469772E-5 0.0 0.0 0.11520414373208979 0.0 4 4.521355719469772E-5 0.0 0.0 0.1724897206977718 0.0 5 4.521355719469772E-5 0.0 0.0 0.3078591109386967 0.0 6 4.521355719469772E-5 0.0 0.0 0.432558101681673 0.0 7 4.521355719469772E-5 0.0 0.0 0.5157058333627221 0.0 8 4.521355719469772E-5 0.0 0.0 0.7165896679787641 0.0 9 4.521355719469772E-5 0.0 0.0 0.7792556582506152 0.0 10 4.521355719469772E-5 0.0 0.0 0.9064866081964945 0.0 11 4.521355719469772E-5 0.0 0.0 1.0877477589900377 0.0 12 4.521355719469772E-5 0.0 0.0 1.237585487533266 0.0 13 4.521355719469772E-5 0.0 0.0 1.2988046439748866 0.0 14 4.521355719469772E-5 0.0 0.0 1.3222704801589347 0.0 15 4.521355719469772E-5 0.0 0.0 1.367257969567659 0.0 16 4.521355719469772E-5 0.0 0.0 1.4757252932777387 0.0 17 4.521355719469772E-5 0.0 0.0 1.6018259042937506 0.0 18 4.521355719469772E-5 0.0 0.0 1.7635547983791844 0.0 19 4.521355719469772E-5 0.0 0.0 1.850681323093367 0.0 20 4.521355719469772E-5 0.0 0.0 1.9492016642206131 0.0 21 4.521355719469772E-5 0.0 0.0 2.070373997502403 0.0 22 4.521355719469772E-5 0.0 0.0 2.2077779978170895 0.0 23 4.521355719469772E-5 0.0 0.0 2.35725401790276 0.0 24 4.521355719469772E-5 0.0 0.0 2.469428853302805 0.0 25 4.521355719469772E-5 0.0 0.0 2.564422536968865 0.0 26 4.521355719469772E-5 0.0 0.0 2.6620386069522173 0.0 27 4.521355719469772E-5 0.0 0.0 2.7661654291716062 0.0 28 4.521355719469772E-5 0.0 0.0 2.877662061213731 0.0 29 4.521355719469772E-5 0.0 0.0 2.9954433777059184 0.0 30 4.521355719469772E-5 0.0 0.0 3.1458688824926777 0.0 31 4.521355719469772E-5 0.0 0.0 3.2893767130286484 0.0 32 4.521355719469772E-5 0.0 0.0 3.4133522868565094 0.0 33 4.521355719469772E-5 0.0 0.0 3.5428891282193185 0.0 34 4.521355719469772E-5 0.0 0.0 3.686939521441625 0.0 35 4.521355719469772E-5 0.0 0.0 3.853415839032502 0.0 36 4.521355719469772E-5 0.0 0.0 4.010623377398466 0.0 37 9.042711438939544E-5 0.0 0.0 4.16859954623674 0.0 38 9.042711438939544E-5 0.0 0.0 4.3428978092223 0.0 39 9.042711438939544E-5 0.0 0.0 4.5820323132250556 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCGA 25 3.89198E-5 45.0 22 GTCGATC 20 7.034704E-4 45.0 29 CGACATA 35 1.2126111E-7 45.0 15 ACTCGCG 20 7.034704E-4 45.0 39 CGACTCG 25 3.89198E-5 45.0 36 TATCCGC 20 7.034704E-4 45.0 28 TGCCCCG 30 2.1664164E-6 44.999996 26 ATTCGAC 30 2.1664164E-6 44.999996 12 CGACGGT 370 0.0 42.567566 28 CGTTTTT 5505 0.0 41.77112 1 TATCGCT 65 0.0 41.53846 11 AGGGCGA 1330 0.0 40.770676 6 GCGATAC 105 0.0 40.714287 9 TACGGGA 970 0.0 40.360825 4 TCTAGCG 145 0.0 40.34483 1 TGATCGG 45 1.9297659E-8 40.000004 2 ATTACGC 45 1.9297659E-8 40.000004 42 TACGTCA 45 1.9297659E-8 40.000004 19 CACGACG 395 0.0 39.873417 26 CGCATGG 215 0.0 39.76744 2 >>END_MODULE