SRR1548138_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548138_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	279203
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3937	1.4100851351883754	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCG	891	0.3191226455303131	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTC	762	0.27291970358484685	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGC	541	0.19376582629842803	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	316	0.11317929964935908	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	20	7.024102E-4	45.000004	1
TTGTGCG	20	7.024102E-4	45.000004	1
GGCACCG	40	6.7830115E-9	45.000004	8
GCACCGA	40	6.7830115E-9	45.000004	9
CGTTAGG	35	1.2075179E-7	45.000004	2
TACGAAG	20	7.024102E-4	45.000004	1
GAACGCT	20	7.024102E-4	45.000004	30
TTAACGG	20	7.024102E-4	45.000004	2
ATTGCGG	45	3.8198777E-10	45.000004	2
AACACGT	20	7.024102E-4	45.000004	41
CGGGCAA	25	3.8831953E-5	45.0	6
TATTGCG	30	2.1595788E-6	44.999996	1
TTGCGAG	30	2.1595788E-6	44.999996	1
CGTTTTT	1725	0.0	43.43478	1
CGGGATC	80	0.0	42.187504	6
CGGGCGA	65	0.0	41.538464	6
TCACGAC	55	6.002665E-11	40.909092	25
GACCGAT	55	6.002665E-11	40.909092	9
CGACGGT	50	1.0750227E-9	40.5	28
ATGATCG	40	3.4456934E-7	39.375004	27