##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548138_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 279203 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.032270426893692 31.0 31.0 33.0 30.0 34.0 2 31.403992793773707 31.0 31.0 34.0 30.0 34.0 3 31.431420865821643 31.0 31.0 34.0 30.0 34.0 4 35.290738280032805 37.0 35.0 37.0 33.0 37.0 5 35.17155976117735 37.0 35.0 37.0 32.0 37.0 6 35.21838590559557 37.0 35.0 37.0 32.0 37.0 7 35.62599255738656 37.0 35.0 37.0 35.0 37.0 8 35.600631082044245 37.0 35.0 37.0 35.0 37.0 9 37.32780450066797 39.0 37.0 39.0 35.0 39.0 10 36.672313692904446 39.0 35.0 39.0 32.0 39.0 11 36.33855295251126 38.0 35.0 39.0 32.0 39.0 12 35.82739440478792 37.0 35.0 39.0 31.0 39.0 13 35.57993646200077 37.0 35.0 39.0 30.0 39.0 14 36.56752613689681 38.0 35.0 40.0 31.0 41.0 15 36.78943277830109 38.0 35.0 41.0 31.0 41.0 16 36.9143705475944 38.0 35.0 41.0 31.0 41.0 17 36.73041478780672 38.0 35.0 40.0 31.0 41.0 18 36.6253084673159 38.0 35.0 40.0 31.0 41.0 19 36.512566125722145 38.0 35.0 40.0 31.0 41.0 20 36.325372578374875 38.0 35.0 40.0 30.0 41.0 21 36.24179897780468 38.0 35.0 40.0 30.0 41.0 22 36.14244116288149 38.0 34.0 40.0 30.0 41.0 23 36.09164299810532 38.0 34.0 40.0 30.0 41.0 24 35.90908765306963 38.0 34.0 40.0 30.0 41.0 25 35.84140571555463 37.0 34.0 40.0 30.0 41.0 26 35.724648374122054 37.0 34.0 40.0 29.0 41.0 27 35.64721367607081 37.0 34.0 40.0 29.0 41.0 28 35.6273141764236 37.0 34.0 40.0 29.0 41.0 29 35.618582178558256 37.0 34.0 40.0 29.0 41.0 30 35.53941755640162 37.0 34.0 40.0 29.0 41.0 31 35.399863181985864 37.0 34.0 40.0 28.0 41.0 32 35.16575036801181 37.0 34.0 40.0 27.0 41.0 33 34.9928116818229 37.0 34.0 40.0 25.0 41.0 34 34.79302156495453 37.0 34.0 40.0 25.0 41.0 35 34.57405901799049 37.0 33.0 40.0 24.0 41.0 36 34.39851649158498 37.0 33.0 40.0 23.0 41.0 37 34.3336031489633 37.0 33.0 40.0 23.0 41.0 38 34.22646246637751 37.0 33.0 40.0 23.0 41.0 39 34.14210449028126 37.0 33.0 40.0 23.0 41.0 40 33.981826842834785 36.0 33.0 40.0 22.0 41.0 41 33.89035934427638 36.0 33.0 40.0 22.0 41.0 42 33.79640619907379 36.0 33.0 40.0 21.0 41.0 43 33.65968130714928 36.0 33.0 40.0 21.0 41.0 44 33.47933940537888 36.0 32.0 40.0 20.0 41.0 45 33.39382098329889 35.0 32.0 40.0 20.0 41.0 46 33.239542555058506 35.0 32.0 40.0 20.0 41.0 47 33.17405615269177 35.0 32.0 40.0 19.0 41.0 48 33.087438172225944 35.0 32.0 40.0 19.0 41.0 49 32.966458096796956 35.0 31.0 39.0 18.0 41.0 50 32.849428551985476 35.0 31.0 39.0 18.0 41.0 51 32.51522369028986 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 6.0 15 13.0 16 40.0 17 77.0 18 196.0 19 414.0 20 625.0 21 1180.0 22 1637.0 23 2266.0 24 3247.0 25 4451.0 26 5713.0 27 6590.0 28 7201.0 29 7865.0 30 9087.0 31 10881.0 32 12905.0 33 15841.0 34 23532.0 35 29830.0 36 23403.0 37 26401.0 38 35485.0 39 50309.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.04549019888755 23.223604330899022 27.717109056851108 16.01379641336232 2 32.10603037932974 26.88044182906344 28.274051496581343 12.739476295025485 3 27.54877275673972 26.688466814468327 32.95881491244722 12.80394551634474 4 24.067792967840603 26.824210341579423 34.834152928156215 14.273843762423757 5 23.885488336443377 30.859625433824135 30.957045590484345 14.297840639248147 6 21.116535280781367 39.97628965304814 28.790879754157366 10.116295312013122 7 83.82861215674616 3.33699852795278 10.850528110371307 1.9838612049297464 8 83.73405729881127 4.472014985512334 9.534997833117838 2.258929882558568 9 78.79284964703102 5.984892712470854 10.532838114203644 4.689419526294488 10 40.79289978975871 33.27829572031819 16.0961737517147 9.832630738208401 11 33.15902766087757 21.970394300920834 29.593521559582097 15.2770564786195 12 30.899381453637677 21.60291973940108 30.499672281458295 16.998026525502947 13 23.113648492315626 29.88721467892537 30.38720930649026 16.611927522268743 14 16.686067126785886 34.1489883704688 30.864997868934076 18.299946633811242 15 15.588657714995898 27.84174955140167 40.158236122104704 16.411356611497727 16 18.94141538593783 26.567766105665054 37.58018359401583 16.91063491438129 17 19.712538905384257 26.372209467663314 30.63398315920674 23.28126846774569 18 20.77126678438269 27.559517626959597 33.19591838196581 18.473297206691903 19 23.40841609868089 29.642231637912197 27.980000214897405 18.969352048509506 20 25.201376776037502 28.45814693968188 29.381489453909882 16.958986830370733 21 22.17096521169185 30.051611193289467 30.50468655422757 17.272737040791107 22 21.400916179267416 24.633331303746736 31.618929596028693 22.346822920957152 23 18.47795331712052 29.531201312306816 31.089207494188813 20.901637876383848 24 19.205381031006112 28.181287450349746 34.88680279223361 17.726528726410532 25 17.97401890380834 30.29945953302794 32.31483902393599 19.41168253922773 26 17.76879188260871 32.97672302948034 29.903331984255182 19.351153103655765 27 18.479385966483168 32.46061109658564 30.356765507533943 18.703237429397248 28 15.924972152878015 30.41156434565531 35.37282908851266 18.290634412954017 29 17.382334717033842 26.72141774980928 35.24603961991812 20.650207913238756 30 18.2515947178218 30.400461313094773 32.83274176853401 18.51520220054942 31 22.867232801939807 28.599262901902918 28.556999745704736 19.976504550452535 32 23.440292546999853 29.255058147656005 28.563804830177325 18.740844475166814 33 22.239016056417732 28.564521154858653 28.498261121836084 20.698201666887535 34 18.65954162383642 29.171248159940976 29.718520216473323 22.450689999749287 35 18.388412731954887 29.07311167859944 31.35209865223511 21.18637693721056 36 22.36616368735293 28.776553260530868 28.78443283202544 20.072850220090757 37 18.245505958030535 30.97495370751747 31.116069669738504 19.66347066471349 38 18.464701310516006 31.57236849174257 27.997192007249204 21.965738190492225 39 18.847935015024913 30.393656228622184 28.98786904152176 21.770539714831145 40 20.838601304427247 29.107137100962383 28.41695827050569 21.637303324104685 41 17.960408734863165 27.92376872741339 29.47103003907551 24.644792498647938 42 20.061030862848895 28.47820403075898 28.48679992693488 22.973965179457238 43 20.481513450786704 29.047682152412403 27.68200914746618 22.788795249334715 44 19.218633037610626 30.834195907637096 28.814518468641097 21.13265258611118 45 17.960766897203825 32.908672184754465 27.08853414898837 22.04202676905334 46 20.912382746603726 31.596365368566957 27.342829410858766 20.14842247397055 47 19.29169815510578 29.596745020648058 29.961354283442514 21.150202540803644 48 20.42384931394004 28.022263371095583 30.5713047495908 20.98258256537358 49 19.008391743641724 27.17771657181334 31.898654384086132 21.915237300458806 50 18.231179464404036 30.348885936039373 30.451678527809516 20.968256071747078 51 17.91026600717041 31.34063745733391 28.277991282328628 22.47110525316705 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 193.0 1 297.0 2 401.0 3 2934.0 4 5467.0 5 3682.0 6 1897.0 7 1938.0 8 1979.0 9 2258.0 10 2537.0 11 2746.5 12 2956.0 13 2993.5 14 3031.0 15 2788.0 16 2545.0 17 2234.0 18 1923.0 19 1767.0 20 1611.0 21 1648.5 22 1686.0 23 1815.0 24 1944.0 25 2184.5 26 3086.5 27 3748.0 28 4146.0 29 4544.0 30 5438.5 31 6333.0 32 7152.0 33 7971.0 34 8678.5 35 9386.0 36 10213.5 37 11041.0 38 11806.5 39 12572.0 40 15024.0 41 17476.0 42 19852.0 43 22228.0 44 21893.0 45 21558.0 46 21254.0 47 20950.0 48 22052.0 49 23154.0 50 21436.0 51 19718.0 52 18464.5 53 17211.0 54 15168.5 55 13126.0 56 11727.0 57 10328.0 58 9266.0 59 8204.0 60 7115.0 61 6026.0 62 5354.5 63 4683.0 64 3975.0 65 3267.0 66 2642.5 67 2018.0 68 1640.0 69 1262.0 70 1035.5 71 809.0 72 638.0 73 467.0 74 346.0 75 195.5 76 166.0 77 127.5 78 89.0 79 53.0 80 17.0 81 16.0 82 15.0 83 12.0 84 9.0 85 5.0 86 1.0 87 1.5 88 2.0 89 1.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 279203.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.80690984449645 #Duplication Level Percentage of deduplicated Percentage of total 1 71.35437228662053 26.263339477642784 2 7.130431311185316 5.24898284846345 3 3.7373915204774373 4.126854982433955 4 2.6895942680904863 3.9598261497552385 5 2.2357076865667938 4.114474562905586 6 1.9588581406674608 4.325970898902311 7 1.6340467751276837 4.210094863367037 8 1.3152327059639557 3.8727721306358744 9 1.2262845933124564 4.062217182277192 >10 6.687098786657532 36.50661572706049 >50 0.012992420299821655 0.29796214041249725 >100 0.013991837245961784 0.7555731313669992 >500 0.002998250838420382 0.8070727605740975 >1k 9.994169461401273E-4 1.4482431442024712 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3937 1.4100851351883754 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCG 891 0.3191226455303131 No Hit GAATCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTC 762 0.27291970358484685 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGC 541 0.19376582629842803 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 316 0.11317929964935908 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.037248883428902986 0.0 2 0.0 0.0 0.0 0.18660257948517744 0.0 3 0.0 0.0 0.0 0.2997818791345365 0.0 4 0.0 0.0 0.0 0.505367062674828 0.0 5 0.0 0.0 0.0 1.2596569521101135 0.0 6 0.0 0.0 0.0 1.772187261598192 0.0 7 0.0 0.0 0.0 2.211652453591115 0.0 8 0.0 0.0 0.0 2.8212447573987385 0.0 9 0.0 0.0 0.0 3.076256343950459 0.0 10 0.0 0.0 0.0 3.7750310705830525 0.0 11 0.0 0.0 0.0 4.052606884596512 0.0 12 0.0 0.0 0.0 4.562988220040616 0.0 13 0.0 0.0 0.0 4.683688928843888 0.0 14 0.0 0.0 0.0 4.750665286547781 0.0 15 0.0 0.0 0.0 4.866351722581777 0.0 16 0.0 0.0 0.0 4.998155463945588 0.0 17 0.0 0.0 0.0 5.135331640419336 0.0 18 0.0 0.0 0.0 5.289341446904224 0.0 19 0.0 0.0 0.0 5.426517623377972 0.0 20 0.0 0.0 0.0 5.522146968334868 0.0 21 0.0 0.0 0.0 5.655025196720666 0.0 22 0.0 0.0 0.0 5.791485048513089 0.0 23 0.0 0.0 0.0 5.932959173074788 0.0 24 0.0 0.0 0.0 6.038975225910896 0.0 25 0.0 0.0 0.0 6.137828031933754 0.0 26 0.0 0.0 0.0 6.236680837956612 0.0 27 0.0 0.0 0.0 6.33983159206742 0.0 28 0.0 0.0 0.0 6.4462058072441915 0.0 29 0.0 0.0 0.0 6.559026944552888 0.0 30 0.0 0.0 0.0 6.708738802949825 0.0 31 0.0 0.0 0.0 6.834453784522372 0.0 32 0.0 0.0 0.0 6.948349408853057 0.0 33 0.0 0.0 0.0 7.060096059139766 0.0 34 0.0 0.0 0.0 7.190467151140926 0.0 35 0.0 0.0 0.0 7.338746360175213 0.0 36 0.0 0.0 0.0 7.468759289835711 0.0 37 0.0 0.0 0.0 7.6088007650347596 0.0 38 0.0 0.0 0.0 7.77033198067356 0.0 39 0.0 0.0 0.0 7.960516183565363 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 20 7.024102E-4 45.000004 1 TTGTGCG 20 7.024102E-4 45.000004 1 GGCACCG 40 6.7830115E-9 45.000004 8 GCACCGA 40 6.7830115E-9 45.000004 9 CGTTAGG 35 1.2075179E-7 45.000004 2 TACGAAG 20 7.024102E-4 45.000004 1 GAACGCT 20 7.024102E-4 45.000004 30 TTAACGG 20 7.024102E-4 45.000004 2 ATTGCGG 45 3.8198777E-10 45.000004 2 AACACGT 20 7.024102E-4 45.000004 41 CGGGCAA 25 3.8831953E-5 45.0 6 TATTGCG 30 2.1595788E-6 44.999996 1 TTGCGAG 30 2.1595788E-6 44.999996 1 CGTTTTT 1725 0.0 43.43478 1 CGGGATC 80 0.0 42.187504 6 CGGGCGA 65 0.0 41.538464 6 TCACGAC 55 6.002665E-11 40.909092 25 GACCGAT 55 6.002665E-11 40.909092 9 CGACGGT 50 1.0750227E-9 40.5 28 ATGATCG 40 3.4456934E-7 39.375004 27 >>END_MODULE