Basic Statistics
Measure | Value |
---|---|
Filename | SRR1548137_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 4590882 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29870 | 0.6506375027717985 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 19125 | 0.0 | 42.411766 | 1 |
CGGTCTA | 835 | 0.0 | 40.68862 | 31 |
ACGTTAG | 95 | 0.0 | 40.26316 | 1 |
CTCACGA | 910 | 0.0 | 39.80769 | 24 |
CGACGGT | 850 | 0.0 | 39.441174 | 28 |
AGGGCGA | 2715 | 0.0 | 39.28177 | 6 |
ACGGGAC | 2075 | 0.0 | 39.25301 | 5 |
CGTTAGG | 735 | 0.0 | 39.183678 | 2 |
AATGCGG | 845 | 0.0 | 39.14201 | 2 |
TAAGGGA | 7005 | 0.0 | 38.222702 | 4 |
GGCGATA | 1270 | 0.0 | 38.09055 | 8 |
AGGGATT | 10930 | 0.0 | 38.0215 | 6 |
TACGGGA | 2555 | 0.0 | 37.95499 | 4 |
GGGCGAT | 4845 | 0.0 | 37.941177 | 7 |
TCTCACG | 955 | 0.0 | 37.93194 | 23 |
TATCGCG | 95 | 0.0 | 37.894737 | 1 |
CGAGGGA | 3925 | 0.0 | 37.66242 | 4 |
TAGGGAC | 5330 | 0.0 | 37.359287 | 5 |
GCGGGAT | 3390 | 0.0 | 37.300884 | 5 |
CGGGATC | 1425 | 0.0 | 37.263157 | 6 |