SRR1548135_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548135_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2132857
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31127	1.4594039825454777	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5832	0.27343605314374103	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCG	35	1.2125747E-7	45.000004	1
CCGATTC	20	7.034645E-4	45.000004	12
CTATCGT	35	1.2125747E-7	45.000004	13
GCGCGTC	35	1.2125747E-7	45.000004	38
TAGAACG	35	1.2125747E-7	45.000004	1
TATGCGT	40	6.8193913E-9	45.000004	20
CCGCTCG	90	0.0	45.000004	19
CCTCGCT	20	7.034645E-4	45.000004	43
CTAAACG	35	1.2125747E-7	45.000004	1
GTCCGTT	40	6.8193913E-9	45.000004	22
TCGTACT	20	7.034645E-4	45.000004	23
ACCGTAA	35	1.2125747E-7	45.000004	25
GCTACCG	35	1.2125747E-7	45.000004	1
TCGGTCA	20	7.034645E-4	45.000004	12
CGTATCA	25	3.8919337E-5	45.0	20
ATCGTCC	25	3.8919337E-5	45.0	37
TGCGCAC	25	3.8919337E-5	45.0	12
GTATCCG	25	3.8919337E-5	45.0	19
CCCGGTC	25	3.8919337E-5	45.0	43
GTCGATC	30	2.16638E-6	44.999996	23