SRR1548131_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548131_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2013024
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31891	1.5842334716327278	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7938	0.39433210930421103	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2265	0.112517287424293	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2080	0.10332713370531102	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAAGT	30	2.1663182E-6	45.000004	18
TAGCGCA	30	2.1663182E-6	45.000004	1
CCGCTCG	55	1.8189894E-12	45.000004	19
TCTAGCG	60	0.0	45.000004	1
TACGCTT	30	2.1663182E-6	45.000004	33
TCGCTGA	55	1.8189894E-12	45.000004	13
ACTACGG	65	0.0	45.000004	2
CCCGCCA	65	0.0	45.000004	38
CGAAGTA	30	2.1663182E-6	45.000004	19
GCCCCGT	25	3.891855E-5	45.0	9
CTTAACG	50	2.1827873E-11	45.0	1
TCGCACA	45	3.8562575E-10	45.0	18
GTCGAAT	20	7.034553E-4	45.0	29
TAGACCG	20	7.034553E-4	45.0	11
GCAACCG	25	3.891855E-5	45.0	27
ATGTCGC	40	6.8193913E-9	45.0	13
AATGCGT	25	3.891855E-5	45.0	2
CTAACGT	35	1.2125383E-7	45.0	34
GCCGACC	50	2.1827873E-11	45.0	14
CTACGCC	20	7.034553E-4	45.0	32