##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548131_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2013024 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.07120183365921 31.0 31.0 33.0 30.0 34.0 2 31.426293476878566 31.0 31.0 34.0 30.0 34.0 3 31.43718554771329 31.0 31.0 34.0 30.0 34.0 4 35.28538656270367 37.0 35.0 37.0 33.0 37.0 5 35.13654183954091 37.0 35.0 37.0 32.0 37.0 6 35.19380394868615 37.0 35.0 37.0 32.0 37.0 7 35.7189859634063 37.0 35.0 37.0 35.0 37.0 8 35.736014076334904 37.0 35.0 37.0 35.0 37.0 9 37.488603712623394 39.0 37.0 39.0 35.0 39.0 10 36.74813911806317 39.0 37.0 39.0 32.0 39.0 11 36.307709694469615 38.0 35.0 39.0 32.0 39.0 12 35.229000250369594 37.0 35.0 39.0 30.0 39.0 13 34.710640807064394 37.0 33.0 39.0 27.0 39.0 14 35.53502293067544 37.0 33.0 40.0 27.0 41.0 15 36.02315123913078 37.0 34.0 40.0 30.0 41.0 16 36.2869255408778 37.0 35.0 40.0 31.0 41.0 17 36.19524109002178 37.0 34.0 40.0 31.0 41.0 18 36.11306223870157 37.0 35.0 40.0 31.0 41.0 19 35.98109610218259 37.0 35.0 40.0 30.0 41.0 20 35.7737364283784 36.0 34.0 40.0 30.0 41.0 21 35.543480355922235 35.0 34.0 40.0 30.0 41.0 22 35.43853227780692 35.0 34.0 40.0 30.0 41.0 23 35.4363932074332 35.0 34.0 40.0 30.0 41.0 24 35.2466691902332 35.0 34.0 40.0 29.0 41.0 25 35.11771295324844 35.0 34.0 40.0 29.0 41.0 26 34.9969458883749 35.0 34.0 39.0 29.0 41.0 27 34.91234580412355 35.0 34.0 39.0 29.0 41.0 28 34.96705354729998 35.0 34.0 40.0 29.0 41.0 29 35.04577640405678 35.0 34.0 40.0 29.0 41.0 30 34.948372200232086 36.0 34.0 40.0 29.0 41.0 31 34.7034868933505 35.0 34.0 39.0 27.0 41.0 32 34.43994855500978 35.0 33.0 39.0 27.0 41.0 33 34.2674811626687 35.0 33.0 39.0 25.0 41.0 34 34.10266693293274 35.0 33.0 39.0 24.0 41.0 35 33.903531204794376 35.0 33.0 39.0 24.0 41.0 36 33.64140914365651 35.0 33.0 39.0 23.0 41.0 37 33.50673911488388 35.0 33.0 39.0 23.0 41.0 38 33.4846117085539 35.0 33.0 39.0 23.0 41.0 39 33.509235359339975 35.0 33.0 39.0 23.0 41.0 40 33.37228865627037 35.0 33.0 39.0 23.0 41.0 41 33.36446212265726 35.0 33.0 39.0 23.0 41.0 42 33.31690531260432 35.0 33.0 39.0 23.0 41.0 43 33.197705044748595 35.0 32.0 39.0 22.0 41.0 44 33.06548506128094 35.0 32.0 39.0 22.0 41.0 45 32.948321530195365 35.0 32.0 39.0 22.0 40.0 46 32.83345603430461 35.0 32.0 38.0 21.0 40.0 47 32.78679439490041 35.0 32.0 38.0 21.0 40.0 48 32.699420871286186 35.0 32.0 38.0 20.0 40.0 49 32.64578117300142 35.0 32.0 38.0 20.0 40.0 50 32.445303185655014 35.0 31.0 38.0 20.0 40.0 51 32.04735562020125 35.0 31.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 2.0 13 6.0 14 30.0 15 70.0 16 240.0 17 593.0 18 1300.0 19 2660.0 20 4716.0 21 7688.0 22 11539.0 23 16649.0 24 23895.0 25 33080.0 26 43265.0 27 49212.0 28 52889.0 29 59200.0 30 70282.0 31 85248.0 32 105262.0 33 134171.0 34 225447.0 35 323846.0 36 157778.0 37 153329.0 38 194539.0 39 256030.0 40 57.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.22542205159998 24.760459885227398 29.660699524695183 15.353418538477435 2 31.387752952771553 25.423591571685183 30.921091849873623 12.26756362566964 3 26.742651851145343 24.852609804950166 34.83753795285104 13.567200391053461 4 24.18018861176022 27.896438393183587 33.5192724974963 14.404100497559892 5 22.256962659163527 31.55814337037214 32.33871031840654 13.8461836520578 6 20.58082765034098 38.654382660117314 30.327407919627387 10.437381769914317 7 84.64081898675822 4.012321760694358 9.35214880696902 1.9947104455783935 8 85.51572162080532 3.0415931454369147 9.017676888104663 2.425008345653107 9 81.918546425676 5.127410304099703 10.453029869489882 2.5010134007344176 10 53.988328008011834 21.883842418172858 15.214075937495034 8.913753636320282 11 46.358364331473446 19.89941500945841 22.03351773252579 11.708702926542356 12 40.59931724609344 22.642203967761933 23.88088765956094 12.877591126583688 13 19.736128332300062 44.306376873797824 24.160864450697062 11.796630343205049 14 12.71827856995247 46.863574403484506 27.75466164337832 12.6634853831847 15 10.391083265773284 27.19783768102119 50.25508886133498 12.155990191870538 16 12.837899597819003 22.201225618770565 48.58903818335003 16.37183660006041 17 13.277039916066574 23.492119318994707 29.060557648592365 34.17028311634635 18 18.92838833516143 27.34274405074157 35.139670465925896 18.58919714817111 19 26.35562218830973 29.747136646160204 25.47922925906497 18.418011906465097 20 28.833039248414327 27.315720031157102 25.51589052092772 18.335350199500848 21 19.175479278935573 32.73021086683517 29.06636979986329 19.02794005436597 22 19.940994245473476 27.933248684566102 26.07872534058213 26.04703172937829 23 15.297830527604242 34.13054191107508 25.993430778768655 24.578196782552023 24 17.191101546727708 27.977460775430394 39.27663058165228 15.554807096189613 25 13.717422146978874 29.523592366509295 36.67447581350247 20.08450967300936 26 13.194477562115503 40.413874846996364 27.458291605067796 18.933355985820338 27 14.970959114248018 40.18342553292956 29.26100235267935 15.584613000143069 28 11.583915541990558 34.07555001828095 38.81935833849969 15.521176101228798 29 12.130456467483745 28.84749511183175 39.020349484159155 20.001698936525347 30 16.30228949083568 35.802404740330964 31.605485081151542 16.289820687681818 31 27.272551146931185 31.83469248255361 24.04884392833866 16.843912442176546 32 27.672347671960196 31.835735689191978 25.7587092851352 14.733207353712624 33 25.6425656127299 33.06816014116076 23.13628650229704 18.152987743812293 34 17.51171372025371 33.55886467324781 27.035097445435323 21.894324161063157 35 16.89746371627959 30.929934268046484 30.336796779372726 21.835805236301205 36 28.188635604940625 27.74477601856709 27.903740839652187 16.162847536840097 37 17.69223814519847 34.77633649673327 31.672995453606116 15.858429904462144 38 17.19601952088003 37.203083520117 23.95127926939768 21.64961768960529 39 17.354338547379463 35.76211709348721 28.7343320298218 18.149212329311524 40 21.784539081501265 30.27902300220961 25.993281749248894 21.943156167040236 41 14.973939704643364 26.644590427138475 29.746292145548193 28.635177722669976 42 20.070749280684186 28.06980940117952 26.13605202918594 25.723389288950354 43 20.8230006199628 29.069847155324524 26.40703737262944 23.700114852083235 44 17.27465743081056 35.399230212853894 27.333901632568715 19.99221072376683 45 15.310746419317406 42.259108684248176 22.548116664282194 19.882028232152223 46 21.536603637115107 37.1552450442717 24.097725610822323 17.210425707790865 47 18.865150142273514 32.22614335447565 26.28721763873655 22.621488864514284 48 21.066961943821834 28.38167850954584 30.761431557696284 19.78992798893605 49 20.012727120988124 26.194223218401767 31.579504268205444 22.21354539240466 50 17.250564325114855 35.78909143656509 27.96320361803933 18.99714062028073 51 15.821222201026913 37.2631920930898 24.095589521038992 22.819996184844292 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2550.0 1 2843.0 2 3136.0 3 20500.5 4 37865.0 5 24700.5 6 11536.0 7 13258.0 8 14980.0 9 19256.0 10 23532.0 11 26692.0 12 29852.0 13 30123.5 14 30395.0 15 27363.0 16 24331.0 17 21800.0 18 19269.0 19 16760.0 20 14251.0 21 13690.5 22 13130.0 23 12484.0 24 11838.0 25 12261.0 26 14448.5 27 16213.0 28 18629.0 29 21045.0 30 25157.5 31 29270.0 32 33796.0 33 38322.0 34 43181.5 35 48041.0 36 50820.0 37 53599.0 38 67204.5 39 80810.0 40 115570.0 41 150330.0 42 179770.0 43 209210.0 44 221340.0 45 233470.0 46 229885.0 47 226300.0 48 207823.5 49 189347.0 50 166108.5 51 142870.0 52 123094.0 53 103318.0 54 85494.0 55 67670.0 56 58185.0 57 48700.0 58 42410.0 59 36120.0 60 31098.5 61 26077.0 62 21095.5 63 16114.0 64 13464.5 65 10815.0 66 8230.5 67 5646.0 68 4680.5 69 3715.0 70 3101.0 71 2487.0 72 2119.0 73 1751.0 74 1474.0 75 864.5 76 532.0 77 424.5 78 317.0 79 245.0 80 173.0 81 133.5 82 94.0 83 72.0 84 50.0 85 48.5 86 47.0 87 30.0 88 13.0 89 9.0 90 5.0 91 5.0 92 5.0 93 2.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2013024.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.636315931983926 #Duplication Level Percentage of deduplicated Percentage of total 1 78.23879079535385 18.492767773753798 2 9.200095590666432 4.349127319708882 3 3.413663018608024 2.4205925277944758 4 1.9348299028122968 1.829290034300848 5 1.2128121835676222 1.43332059684818 6 0.839615467387839 1.1907249869135585 7 0.6050570966911201 1.0010924485996182 8 0.44031515382461234 0.832594246835091 9 0.33753900630553474 0.718036073316498 >10 2.2705372388467917 10.863427527830611 >50 0.5122910982430469 8.83331753449047 >100 0.9802771966156186 43.56321653435689 >500 0.011848806870478722 1.7393359388844798 >1k 0.0019042725327555086 0.7412644781663004 >5k 2.1158583697283428E-4 0.39698808714641015 >10k+ 2.1158583697283428E-4 1.5949038910539388 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 31891 1.5842334716327278 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7938 0.39433210930421103 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2265 0.112517287424293 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2080 0.10332713370531102 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1015387794681037 0.0 2 0.0 0.0 0.0 0.3432646605306246 0.0 3 0.0 0.0 0.0 0.5435106585912538 0.0 4 0.0 0.0 0.0 0.8151417966204079 0.0 5 0.0 0.0 0.0 1.4850791644809003 0.0 6 0.0 0.0 0.0 2.2965945761203046 0.0 7 0.0 0.0 0.0 2.9271384742556474 0.0 8 0.0 0.0 0.0 4.130204110830273 0.0 9 0.0 0.0 0.0 4.577541052665045 0.0 10 0.0 0.0 0.0 5.206544979096126 0.0 11 0.0 0.0 0.0 6.016371389511501 0.0 12 0.0 0.0 0.0 6.594009808129461 0.0 13 0.0 0.0 0.0 6.83037062648036 0.0 14 0.0 0.0 0.0 6.915019393708173 0.0 15 0.0 0.0 0.0 7.0397571017533815 0.0 16 0.0 0.0 0.0 7.345019234743352 0.0 17 0.0 0.0 0.0 7.711184764811547 0.0 18 0.0 0.0 0.0 8.15027540655253 0.0 19 0.0 0.0 0.0 8.377048659131734 0.0 20 0.0 0.0 0.0 8.590558284451651 0.0 21 0.0 0.0 0.0 8.891597914381547 0.0 22 0.0 0.0 0.0 9.197555518463764 0.0 23 0.0 0.0 0.0 9.551947716470345 0.0 24 0.0 0.0 0.0 9.807831401910757 0.0 25 0.0 0.0 0.0 10.008872224076812 0.0 26 0.0 0.0 0.0 10.19982871540528 0.0 27 0.0 0.0 0.0 10.38035314035004 0.0 28 0.0 0.0 0.0 10.582039757101754 0.0 29 4.967650658909183E-5 0.0 0.0 10.794903587836012 0.0 30 4.967650658909183E-5 0.0 0.0 11.049942772664409 0.0 31 4.967650658909183E-5 0.0 0.0 11.298722717662582 0.0 32 4.967650658909183E-5 0.0 0.0 11.515709698443734 0.0 33 4.967650658909183E-5 0.0 0.0 11.73647209372566 0.0 34 4.967650658909183E-5 0.0 0.0 11.961655698094011 0.0 35 9.935301317818366E-5 0.0 0.0 12.234081660228592 0.0 36 9.935301317818366E-5 0.0 0.0 12.477297836488786 0.0 37 9.935301317818366E-5 0.0 0.0 12.707995533088528 0.0 38 1.490295197672755E-4 0.0 0.0 12.949473031618103 0.0 39 1.490295197672755E-4 0.0 0.0 13.198252976616274 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAAGT 30 2.1663182E-6 45.000004 18 TAGCGCA 30 2.1663182E-6 45.000004 1 CCGCTCG 55 1.8189894E-12 45.000004 19 TCTAGCG 60 0.0 45.000004 1 TACGCTT 30 2.1663182E-6 45.000004 33 TCGCTGA 55 1.8189894E-12 45.000004 13 ACTACGG 65 0.0 45.000004 2 CCCGCCA 65 0.0 45.000004 38 CGAAGTA 30 2.1663182E-6 45.000004 19 GCCCCGT 25 3.891855E-5 45.0 9 CTTAACG 50 2.1827873E-11 45.0 1 TCGCACA 45 3.8562575E-10 45.0 18 GTCGAAT 20 7.034553E-4 45.0 29 TAGACCG 20 7.034553E-4 45.0 11 GCAACCG 25 3.891855E-5 45.0 27 ATGTCGC 40 6.8193913E-9 45.0 13 AATGCGT 25 3.891855E-5 45.0 2 CTAACGT 35 1.2125383E-7 45.0 34 GCCGACC 50 2.1827873E-11 45.0 14 CTACGCC 20 7.034553E-4 45.0 32 >>END_MODULE