##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548130_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1683118 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.115987708526674 31.0 31.0 33.0 30.0 34.0 2 31.493155560097392 31.0 31.0 34.0 30.0 34.0 3 31.499836612762742 31.0 31.0 34.0 30.0 34.0 4 35.367377688314185 37.0 35.0 37.0 33.0 37.0 5 35.24190044904754 37.0 35.0 37.0 33.0 37.0 6 35.29496505889664 37.0 35.0 37.0 32.0 37.0 7 35.749175637121105 37.0 35.0 37.0 35.0 37.0 8 35.75502846502741 37.0 35.0 37.0 35.0 37.0 9 37.48151941812755 39.0 37.0 39.0 35.0 39.0 10 36.79594122337234 39.0 37.0 39.0 32.0 39.0 11 36.43787007209239 39.0 35.0 39.0 32.0 39.0 12 35.973181915944096 37.0 35.0 39.0 31.0 39.0 13 35.7660894839221 38.0 35.0 39.0 30.0 39.0 14 36.75081426257695 39.0 35.0 41.0 31.0 41.0 15 36.98341471007974 39.0 35.0 41.0 31.0 41.0 16 37.0610444425168 39.0 35.0 41.0 32.0 41.0 17 36.921059604852424 38.0 35.0 41.0 31.0 41.0 18 36.80319621084202 38.0 35.0 40.0 31.0 41.0 19 36.68901586222713 38.0 35.0 40.0 31.0 41.0 20 36.517977943317106 38.0 35.0 40.0 31.0 41.0 21 36.378041824756195 38.0 35.0 40.0 30.0 41.0 22 36.30331919687152 38.0 35.0 40.0 30.0 41.0 23 36.24162536435354 38.0 35.0 40.0 30.0 41.0 24 36.064966330346415 38.0 34.0 40.0 30.0 41.0 25 35.93757181611747 38.0 34.0 40.0 30.0 41.0 26 35.85318914063066 38.0 34.0 40.0 30.0 41.0 27 35.80069252423181 38.0 34.0 40.0 30.0 41.0 28 35.79729585210306 38.0 34.0 40.0 30.0 41.0 29 35.79807892257109 38.0 34.0 40.0 30.0 41.0 30 35.706583852112566 37.0 34.0 40.0 29.0 41.0 31 35.545034275671696 38.0 34.0 40.0 29.0 41.0 32 35.3323641004374 37.0 34.0 40.0 27.0 41.0 33 35.13146315350439 37.0 34.0 40.0 26.0 41.0 34 34.91505289587539 37.0 34.0 40.0 25.0 41.0 35 34.6823003497081 37.0 33.0 40.0 24.0 41.0 36 34.496063258785185 37.0 33.0 40.0 23.0 41.0 37 34.41593162214414 37.0 33.0 40.0 23.0 41.0 38 34.32489997730403 37.0 33.0 40.0 23.0 41.0 39 34.288109924556686 37.0 33.0 40.0 23.0 41.0 40 34.15392206607024 37.0 33.0 40.0 23.0 41.0 41 34.08401728221075 37.0 33.0 40.0 22.0 41.0 42 34.036442483533534 37.0 33.0 40.0 22.0 41.0 43 33.946184402994916 37.0 33.0 40.0 22.0 41.0 44 33.79452361628834 36.0 33.0 40.0 21.0 41.0 45 33.70670386746502 36.0 33.0 40.0 21.0 41.0 46 33.605494683082235 36.0 33.0 40.0 21.0 41.0 47 33.575654232204755 36.0 32.0 40.0 21.0 41.0 48 33.457682705550056 36.0 32.0 40.0 20.0 41.0 49 33.335265263635705 36.0 32.0 40.0 20.0 41.0 50 33.20319728028576 35.0 32.0 40.0 20.0 41.0 51 32.861947290683126 35.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 3.0 12 4.0 13 12.0 14 26.0 15 71.0 16 193.0 17 517.0 18 1103.0 19 2198.0 20 3788.0 21 5857.0 22 8610.0 23 12450.0 24 17962.0 25 25096.0 26 33590.0 27 39443.0 28 41921.0 29 45817.0 30 51459.0 31 60936.0 32 73489.0 33 92665.0 34 138573.0 35 177258.0 36 137097.0 37 161250.0 38 228027.0 39 323664.0 40 37.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.53860870123188 23.637142493871494 27.91230323720619 16.91194556769044 2 33.589861198085934 24.69191108407135 29.028683669237687 12.689544048605029 3 27.408773478745996 24.74140256357546 34.69905259167806 13.150771366000482 4 25.058433217397713 27.013198123958038 33.972543814515674 13.955824844128575 5 22.758297398043393 30.924747997466607 32.76288412339479 13.554070481095208 6 21.490471850458494 39.15387988245625 29.21666811239616 10.138980154689095 7 85.19420504088245 3.3256135339292907 9.805610777140997 1.6745706480472553 8 86.30250523136228 2.596549974511591 9.487035371257392 1.6139094228687472 9 81.85480756548263 5.3431785531376885 10.711191966338664 2.0908219150410132 10 41.515984024887146 34.310666275329474 15.604966496704332 8.568383203079048 11 31.51264498389299 22.881818149410798 30.19009956521171 15.415437301484507 12 29.940384453139945 22.468715800080567 31.173750147048512 16.417149599730976 13 22.87350025369582 28.954238502588648 31.456677428439363 16.715583815276172 14 16.764184091667964 33.04438547980593 32.733177352984164 17.45825307554194 15 16.217995410898105 27.200469604626655 41.057905625155215 15.523629359320024 16 20.892296321470035 25.088437055512447 38.267845748188776 15.751420874828739 17 20.004123299732996 24.70331848390903 31.982665505329987 23.309892711027985 18 21.021699013378743 26.431777213481173 34.64866990906164 17.897853864078456 19 24.431263880488473 27.16006839686819 30.728089177348235 17.6805785452951 20 25.81868888574657 27.61184896127307 29.974309584948887 16.595152568031473 21 22.570728849670672 27.082830793800554 32.72889957804503 17.617540778483743 22 21.956689905282932 23.920723324211373 32.593674359135846 21.52891241136985 23 18.936343144093286 27.63383197137693 32.89745579335495 20.532369091174832 24 19.45609279919768 26.7166057281783 35.979176742212964 17.848124730411058 25 19.256641542660706 27.617493247651087 34.028570783510126 19.09729442617808 26 18.88156385945608 32.249729371321564 29.807416948781963 19.061289820440397 27 17.811228921561057 31.21118067776591 32.95490868732911 18.022681713343925 28 17.06267772075398 29.102594114019336 36.53855522904514 17.296172936181538 29 18.085838307236926 26.688265469206556 36.16217044794245 19.063725775614067 30 19.343088244555638 28.50869635997001 33.67719910309319 18.471016292381165 31 23.911335984761614 27.390414694632227 30.151718417841174 18.54653090276499 32 24.789646358722322 27.683264037340223 30.408919636056414 17.118169967881038 33 23.444107899743212 28.35564707881444 29.445766725802947 18.7544782956394 34 19.57622697873827 29.29117269258602 31.275763196638618 19.85683713203709 35 19.56535430076798 28.81176483169926 32.02746331510922 19.595417552423537 36 23.531742872454576 28.239553020049694 29.961535673672312 18.267168433823418 37 20.10269036395547 31.09348245339899 30.507902595064635 18.295924587580906 38 19.774846445703748 31.840667142767177 28.173009854329877 20.211476557199198 39 19.890049301356175 30.57111860249846 29.735467150847416 19.80336494529795 40 21.881056467817466 28.71717847471181 29.058152785485035 20.343612271985684 41 18.505832627302425 28.125835502917802 30.205071777498667 23.163260092281114 42 20.866094949967856 28.46781984388498 28.56490156958692 22.10118363656024 43 21.219367863691076 28.368836884876757 28.863751679917865 21.5480435715143 44 19.449260242003234 30.723930229490744 29.69090699523147 20.135902533274553 45 18.746932775955102 32.63193667942473 28.280607776757183 20.34052276786298 46 21.207782223230932 30.932531171314192 28.37329290043835 19.48639370501652 47 20.24171804947722 29.592280517468172 29.318799989067905 20.847201443986695 48 21.061803153433093 27.94729781274991 30.74407141982915 20.24682761398785 49 20.278792098949687 27.415784276562903 31.73443573177876 20.57098789270865 50 19.127476504915283 30.691787503906443 30.129141272329097 20.051594718849184 51 18.702847928665726 31.517041585913763 29.183634183699535 20.596476301720973 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1301.0 1 1944.0 2 2587.0 3 18121.5 4 33656.0 5 23296.0 6 12936.0 7 12968.0 8 13000.0 9 14054.5 10 15109.0 11 15806.5 12 16504.0 13 16399.5 14 16295.0 15 15159.0 16 14023.0 17 12970.5 18 11918.0 19 11053.0 20 10188.0 21 10416.0 22 10644.0 23 11988.0 24 13332.0 25 14109.5 26 18974.0 27 23061.0 28 25012.5 29 26964.0 30 31935.5 31 36907.0 32 42273.0 33 47639.0 34 53615.0 35 59591.0 36 63079.5 37 66568.0 38 74791.0 39 83014.0 40 94255.5 41 105497.0 42 119493.5 43 133490.0 44 138967.0 45 144444.0 46 140303.0 47 136162.0 48 130253.5 49 124345.0 50 118487.5 51 112630.0 52 102902.0 53 93174.0 54 83348.5 55 73523.0 56 66732.5 57 59942.0 58 55067.0 59 50192.0 60 45320.0 61 40448.0 62 34559.0 63 28670.0 64 24169.5 65 19669.0 66 15806.0 67 11943.0 68 9871.0 69 7799.0 70 6225.0 71 4651.0 72 3713.5 73 2776.0 74 2177.5 75 1308.5 76 1038.0 77 744.0 78 450.0 79 379.5 80 309.0 81 215.5 82 122.0 83 107.5 84 93.0 85 58.5 86 24.0 87 18.0 88 12.0 89 9.0 90 6.0 91 4.0 92 2.0 93 2.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1683118.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.85799251812815 #Duplication Level Percentage of deduplicated Percentage of total 1 79.58118542734476 19.782285119367053 2 6.105148996596976 3.035234961589304 3 2.282519285468696 1.7021654196199216 4 1.268325416932084 1.2611209489859803 5 0.9175853503190947 1.1404664886488025 6 0.6514277571474654 0.9715911787963617 7 0.5303766285021853 0.9228868784168146 8 0.4519653845997459 0.8987961719066717 9 0.3816462792520039 0.8538264318795985 >10 6.226847780103157 38.382293606831084 >50 1.4399203017466082 24.29686565011272 >100 0.1611274818202215 5.029707488287087 >500 9.619550834890735E-4 0.1492125789532356 >1k 7.214663126168051E-4 0.22423733319454597 >5k 0.0 0.0 >10k+ 2.4048877087226838E-4 1.3493097434108496 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22571 1.3410230298766932 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.1882708164252299E-4 0.0 0.0 0.02435955173671721 0.0 2 1.1882708164252299E-4 0.0 0.0 0.08276306236401726 0.0 3 1.1882708164252299E-4 0.0 0.0 0.15239573220653574 0.0 4 1.1882708164252299E-4 0.0 0.0 0.21905772500799112 0.0 5 1.1882708164252299E-4 0.0 0.0 0.39795189642080947 0.0 6 1.1882708164252299E-4 0.0 0.0 0.6984061723539289 0.0 7 1.1882708164252299E-4 0.0 0.0 0.9207316421070894 0.0 8 1.1882708164252299E-4 0.0 0.0 1.2829165869534993 0.0 9 1.1882708164252299E-4 0.0 0.0 1.4625831343969942 0.0 10 1.1882708164252299E-4 0.0 0.0 1.670411700189767 0.0 11 1.1882708164252299E-4 0.0 0.0 1.8752695889414766 0.0 12 1.1882708164252299E-4 0.0 0.0 2.034676118964921 0.0 13 1.1882708164252299E-4 0.0 0.0 2.1068041575219327 0.0 14 1.1882708164252299E-4 0.0 0.0 2.1424522820146894 0.0 15 1.1882708164252299E-4 0.0 0.0 2.184220001212036 0.0 16 1.1882708164252299E-4 0.0 0.0 2.2673989583618024 0.0 17 1.7824062246378448E-4 0.0 0.0 2.373452128727754 0.0 18 1.7824062246378448E-4 0.0 0.0 2.508617934096124 0.0 19 1.7824062246378448E-4 0.0 0.0 2.5831225142859857 0.0 20 1.7824062246378448E-4 0.0 0.0 2.663033726690583 0.0 21 1.7824062246378448E-4 0.0 0.0 2.7606501742599154 0.0 22 1.7824062246378448E-4 0.0 0.0 2.8808437673413274 0.0 23 1.7824062246378448E-4 0.0 0.0 3.0079293311580058 0.0 24 1.7824062246378448E-4 0.0 0.0 3.102515688145454 0.0 25 1.7824062246378448E-4 0.0 0.0 3.1867046754891812 0.0 26 1.7824062246378448E-4 0.0 0.0 3.2688141889041646 0.0 27 1.7824062246378448E-4 0.0 0.0 3.3568650564012743 0.0 28 1.7824062246378448E-4 0.0 0.0 3.449966074868191 0.0 29 1.7824062246378448E-4 0.0 0.0 3.553345635897186 0.0 30 1.7824062246378448E-4 0.0 0.0 3.6860754860918843 0.0 31 1.7824062246378448E-4 0.0 0.0 3.803714296917982 0.0 32 1.7824062246378448E-4 0.0 0.0 3.9096486402022914 0.0 33 1.7824062246378448E-4 0.0 0.0 4.022534367762688 0.0 34 1.7824062246378448E-4 0.0 0.0 4.143262682711492 0.0 35 1.7824062246378448E-4 0.0 0.0 4.278428488079861 0.0 36 1.7824062246378448E-4 0.0 0.0 4.4134160528257675 0.0 37 1.7824062246378448E-4 0.0 0.0 4.5452546999081465 0.0 38 1.7824062246378448E-4 0.0 0.0 4.689332536399705 0.0 39 1.7824062246378448E-4 0.0 0.0 4.87042500882291 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATAG 60 0.0 45.000004 1 CGTTTTT 11645 0.0 43.164448 1 GCGTTAG 135 0.0 41.666664 1 GCGCGAC 125 0.0 41.399998 9 TACGGGA 775 0.0 40.935486 4 CGTTAGG 325 0.0 40.84615 2 TCGTTAG 95 0.0 40.26316 1 TACGCGG 140 0.0 40.17857 2 TCATACG 45 1.9292202E-8 40.0 1 TAATCGG 45 1.9292202E-8 40.0 2 ACGGGAT 730 0.0 38.835617 5 CGACAGG 105 0.0 38.57143 2 ACGTCGT 35 6.2500185E-6 38.571426 29 CGTCGTA 35 6.2500185E-6 38.571426 30 TAAGGGA 2360 0.0 38.32627 4 GTTTGCG 100 0.0 38.25 1 TAGGGAC 1790 0.0 38.21229 5 CTACGCG 65 9.094947E-12 38.076927 1 CGGTCTA 125 0.0 37.8 31 CGAGGGA 1175 0.0 37.723404 4 >>END_MODULE