##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548128_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 319228 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.144576916811808 31.0 31.0 33.0 30.0 34.0 2 31.53211810994023 31.0 31.0 34.0 30.0 34.0 3 31.661868633077297 31.0 31.0 34.0 30.0 34.0 4 35.47159083789643 37.0 35.0 37.0 33.0 37.0 5 35.31740010274788 37.0 35.0 37.0 33.0 37.0 6 35.35249727467515 37.0 35.0 37.0 33.0 37.0 7 35.74946120014535 37.0 35.0 37.0 35.0 37.0 8 35.741332213966196 37.0 35.0 37.0 35.0 37.0 9 37.47530918340497 39.0 37.0 39.0 35.0 39.0 10 36.80417444585061 39.0 37.0 39.0 32.0 39.0 11 36.45451213552696 39.0 35.0 39.0 32.0 39.0 12 35.74058040021552 37.0 35.0 39.0 31.0 39.0 13 35.41781109426491 37.0 35.0 39.0 30.0 39.0 14 36.29533436916561 38.0 35.0 40.0 30.0 41.0 15 36.61825403786635 38.0 35.0 40.0 31.0 41.0 16 36.76384903579886 38.0 35.0 40.0 31.0 41.0 17 36.653260365632086 38.0 35.0 40.0 31.0 41.0 18 36.59146127532673 38.0 35.0 40.0 31.0 41.0 19 36.524402621323944 38.0 35.0 40.0 31.0 41.0 20 36.40731076221384 38.0 35.0 40.0 31.0 41.0 21 36.25475522197301 38.0 34.0 40.0 30.0 41.0 22 36.15266831230343 38.0 34.0 40.0 30.0 41.0 23 36.145532346786624 38.0 34.0 40.0 30.0 41.0 24 35.96937611988923 38.0 34.0 40.0 30.0 41.0 25 35.85284498853484 37.0 34.0 40.0 30.0 41.0 26 35.782027265778694 37.0 34.0 40.0 30.0 41.0 27 35.77159898254539 37.0 34.0 40.0 30.0 41.0 28 35.827728144147756 37.0 34.0 40.0 30.0 41.0 29 35.86528750610849 37.0 34.0 40.0 30.0 41.0 30 35.80469758291879 37.0 34.0 40.0 30.0 41.0 31 35.65752690866716 37.0 34.0 40.0 29.0 41.0 32 35.52424286090193 37.0 34.0 40.0 29.0 41.0 33 35.43711391231346 37.0 34.0 40.0 29.0 41.0 34 35.344067562995725 37.0 34.0 40.0 28.0 41.0 35 35.19585061460774 37.0 34.0 40.0 27.0 41.0 36 35.02776385530091 37.0 34.0 40.0 26.0 41.0 37 34.939500920971845 37.0 34.0 40.0 26.0 41.0 38 34.88590599822071 37.0 34.0 40.0 26.0 41.0 39 34.85347463255103 37.0 34.0 40.0 26.0 41.0 40 34.7049444284336 37.0 33.0 40.0 25.0 41.0 41 34.64841429949754 36.0 33.0 40.0 25.0 41.0 42 34.622774318042275 36.0 33.0 40.0 25.0 41.0 43 34.51716014885912 36.0 33.0 40.0 24.0 41.0 44 34.40882378738707 36.0 33.0 40.0 24.0 41.0 45 34.29887102635107 36.0 33.0 40.0 24.0 41.0 46 34.20748179984212 36.0 33.0 40.0 24.0 41.0 47 34.16901399626599 36.0 33.0 40.0 24.0 41.0 48 34.05944027466262 35.0 33.0 40.0 23.0 41.0 49 33.96295124487827 36.0 33.0 40.0 24.0 41.0 50 33.808440988885685 35.0 33.0 39.0 24.0 41.0 51 33.421319558434725 35.0 32.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 3.0 15 18.0 16 32.0 17 90.0 18 167.0 19 332.0 20 565.0 21 891.0 22 1302.0 23 2043.0 24 2686.0 25 3690.0 26 5011.0 27 5932.0 28 6883.0 29 8101.0 30 9649.0 31 11818.0 32 14585.0 33 18825.0 34 29600.0 35 39453.0 36 24402.0 37 30319.0 38 42422.0 39 60395.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.131579936597035 23.962183768341124 30.006453068026612 13.899783227035222 2 29.51307529414713 25.86677860338066 31.314608994198505 13.30553710827371 3 28.6199832094929 25.896851153407596 31.153282293533145 14.329883343566355 4 26.198516420865335 27.97498966256093 30.859135163582142 14.967358752991592 5 23.90454471412282 32.55980051875149 28.94514265665919 14.5905121104665 6 22.916536143446066 40.57037603217763 25.85362186274387 10.659465961632439 7 88.39450173543673 3.9561066071898456 5.735399150450462 1.9139925069229518 8 89.41195634468154 3.0288696480258626 5.618241507637175 1.940932499655419 9 84.9007605849111 5.511734559625095 6.889433257734284 2.6980715977295224 10 46.16825591740073 31.660443319508314 12.353552946483392 9.817747816607564 11 39.53631886927212 20.737216033681253 24.654792186149084 15.07167291089754 12 36.10867467765985 21.633753931359404 26.23328780683399 16.024283584146755 13 24.34216296816069 32.61712631724034 26.48733820341574 16.553372511183227 14 17.45742854636811 36.69352312453795 28.6199832094929 17.229065119601035 15 16.121706116004862 26.185359680228554 42.05677446840503 15.63615973536156 16 20.345019860413245 23.759820567118172 39.11498991316551 16.78016965930307 17 21.196135677321536 22.128697983886127 28.43986116506071 28.23530517373163 18 22.94378939190798 25.6067763479394 32.373100104000905 19.076334156151717 19 27.004210157003772 26.972258072600148 26.649917926998885 19.373613843397195 20 29.181024220933 26.580375155061585 26.499868432593633 17.73873219141178 21 24.559562444397105 26.749219993233673 29.61864247497087 19.07257508739835 22 23.549939228388485 22.99547658726678 29.28439861165061 24.170185572694123 23 19.96535391632313 28.05549638502888 28.75593619607303 23.223213502574964 24 20.72656533888005 25.431979650907817 35.13288308043154 18.708571929780597 25 19.752026764569525 26.902402044933403 32.9917801696593 20.35379102083777 26 18.920959314345858 32.672885837081964 27.593757439823573 20.812397408748605 27 18.158181613141704 31.862493265001817 31.19431879409074 18.785006327765736 28 16.834049644768005 28.20053378776298 36.17602465949103 18.789391907977997 29 18.06263861566028 26.310975227736915 35.37753580512988 20.248850351472928 30 20.531093763704938 28.539789742754394 31.128535090906812 19.800581402633853 31 26.65524327439949 26.653363740022805 27.43618980791159 19.255203177666118 32 27.502600022554414 26.915872041299636 27.308694726026538 18.272833210119412 33 25.513112884834666 27.313080306238803 26.536832608668416 20.636974200258123 34 20.891024596839877 27.62978184871001 29.031287982257197 22.447905572192916 35 20.683022792486874 26.809678349017002 31.209041813374768 21.298257045121353 36 26.691580939015374 25.893405340383673 28.518488353151977 18.896525367448973 37 20.521069580362624 30.569060358113948 29.661871765634594 19.24799829588883 38 20.657022566942747 31.59935845226609 26.05410552959014 21.689513451201023 39 21.164183592917915 29.74582430112647 28.280100743042592 20.809891362913028 40 23.672735474331827 26.77647324169559 26.9838485345897 22.566942749382886 41 19.536820078439234 24.638816143947274 29.199506308970392 26.624857468643103 42 22.22612051574423 26.237986642775695 26.909293670981242 24.626599170498828 43 22.09110729635245 26.018394376433147 27.779518087385817 24.110980239828585 44 20.217838034257646 29.746764068314807 28.616850652198426 21.418547245229117 45 19.291540842282007 33.294385204305385 25.79911536582004 21.614958587592568 46 22.024070570250732 30.999786986103977 26.86543786885862 20.110704574786674 47 20.921410402596262 27.97686919693761 28.610585537609484 22.49113486285664 48 22.444146503439548 25.83827233200095 30.657398473818088 21.060182690741414 49 21.13003871840816 24.754720763842773 31.772902126379893 22.34233839136918 50 20.49037051887679 29.925946345558664 28.241883544050022 21.34179959151453 51 18.788138885060206 31.906975578583328 27.092548272707905 22.21233726364855 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 241.0 1 376.0 2 511.0 3 1376.5 4 2242.0 5 1632.5 6 1023.0 7 1056.5 8 1090.0 9 1185.5 10 1281.0 11 1316.0 12 1351.0 13 1317.0 14 1283.0 15 1201.0 16 1119.0 17 1019.0 18 919.0 19 1102.5 20 1286.0 21 1280.5 22 1275.0 23 1480.5 24 1686.0 25 2039.5 26 2933.0 27 3473.0 28 4126.5 29 4780.0 30 5659.5 31 6539.0 32 7288.0 33 8037.0 34 9176.0 35 10315.0 36 11196.0 37 12077.0 38 13355.5 39 14634.0 40 18499.0 41 22364.0 42 25417.0 43 28470.0 44 28788.0 45 29106.0 46 28033.0 47 26960.0 48 25834.0 49 24708.0 50 23505.0 51 22302.0 52 21095.5 53 19889.0 54 17638.0 55 15387.0 56 13779.0 57 12171.0 58 11265.0 59 10359.0 60 9748.0 61 9137.0 62 7976.0 63 6815.0 64 5793.5 65 4772.0 66 4026.5 67 3281.0 68 2639.5 69 1998.0 70 1806.5 71 1615.0 72 1327.0 73 1039.0 74 835.5 75 488.5 76 345.0 77 250.5 78 156.0 79 130.0 80 104.0 81 69.5 82 35.0 83 25.0 84 15.0 85 9.0 86 3.0 87 5.0 88 7.0 89 4.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 319228.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.357925996466474 #Duplication Level Percentage of deduplicated Percentage of total 1 72.32821867486663 21.957347099878458 2 5.456552919689199 3.312992594634556 3 2.938778879590552 2.6764569523976594 4 2.1782872945279688 2.64513137945293 5 1.73561308829751 2.6344806846517224 6 1.5220150447317642 2.7723132056085302 7 1.3383413647573548 2.8440487676519606 8 1.2444407755569544 3.0222912777074695 9 1.0906914591738812 2.980001754232085 >10 10.118562392298088 53.63877855325973 >50 0.043338733477107864 0.8194769882341147 >100 0.003095623819793419 0.11747089854273435 >500 0.0010318746065978062 0.16602553660706454 >1k 0.0010318746065978062 0.4131843071409776 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1319 0.4131843071409776 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 530 0.16602553660706454 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.034144874509754786 0.0 2 0.0 0.0 0.0 0.1005550891525806 0.0 3 0.0 0.0 0.0 0.16132670066535518 0.0 4 0.0 0.0 0.0 0.25154435074617515 0.0 5 0.0 0.0 0.0 0.44513639154460133 0.0 6 0.0 0.0 0.0 0.6916686506196198 0.0 7 0.0 0.0 0.0 0.8442241908604509 0.0 8 0.0 0.0 0.0 1.1888054932524716 0.0 9 0.0 0.0 0.0 1.3253849912914908 0.0 10 0.0 0.0 0.0 1.566278647236458 0.0 11 0.0 0.0 0.0 1.8256543912188155 0.0 12 0.0 0.0 0.0 2.0439936346435776 0.0 13 0.0 0.0 0.0 2.1282594258648992 0.0 14 0.0 0.0 0.0 2.1674163920458107 0.0 15 0.0 0.0 0.0 2.2234891676168758 0.0 16 0.0 0.0 0.0 2.3447191349129777 0.0 17 0.0 0.0 0.0 2.4787925871164185 0.0 18 0.0 0.0 0.0 2.6476374252885084 0.0 19 0.0 0.0 0.0 2.7409876326638014 0.0 20 0.0 0.0 0.0 2.849060859323117 0.0 21 0.0 0.0 0.0 2.9781222198554014 0.0 22 0.0 0.0 0.0 3.1168945080005512 0.0 23 0.0 0.0 0.0 3.2710163268886188 0.0 24 0.0 0.0 0.0 3.3837883894896437 0.0 25 0.0 0.0 0.0 3.4837169671833297 0.0 26 0.0 0.0 0.0 3.5823925219592265 0.0 27 0.0 0.0 0.0 3.6788752866289927 0.0 28 0.0 0.0 0.0 3.780370142969915 0.0 29 0.0 0.0 0.0 3.9034796446427005 0.0 30 0.0 0.0 0.0 4.052589371859611 0.0 31 0.0 0.0 0.0 4.180397709474106 0.0 32 0.0 0.0 0.0 4.301940932499655 0.0 33 0.0 0.0 0.0 4.417532296665706 0.0 34 0.0 0.0 0.0 4.554111794704725 0.0 35 0.0 0.0 0.0 4.706040823486662 0.0 36 0.0 0.0 0.0 4.847945668926284 0.0 37 0.0 0.0 0.0 4.987657724259777 0.0 38 0.0 0.0 0.0 5.155249539514077 0.0 39 0.0 0.0 0.0 5.348841580312504 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 55 1.8189894E-12 45.0 25 GAATGCG 20 7.025623E-4 45.0 1 CGACGGT 55 1.8189894E-12 45.0 28 GTAGGGT 140 0.0 45.0 4 CACGACG 55 1.8189894E-12 45.0 26 TATTGCG 20 7.025623E-4 45.0 1 TACGCGG 20 7.025623E-4 45.0 2 GCGATCA 35 1.2082455E-7 45.0 9 GATTGCG 20 7.025623E-4 45.0 1 TTGCACG 35 1.2082455E-7 45.0 1 GGACACG 20 7.025623E-4 45.0 8 TTCGCAT 35 1.2082455E-7 45.0 25 TAATGCG 20 7.025623E-4 45.0 1 ATAGCGG 60 0.0 44.999996 2 TAACGTA 25 3.8844555E-5 44.999996 18 TCGATCA 30 2.1605592E-6 44.999996 17 GCGATAT 30 2.1605592E-6 44.999996 9 CCCCACG 30 2.1605592E-6 44.999996 38 CGTTTTT 755 0.0 42.913906 1 GGATGTA 90 0.0 42.500004 8 >>END_MODULE