##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548120_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 662692 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.523564491498313 31.0 31.0 33.0 30.0 34.0 2 31.911029558226144 31.0 31.0 34.0 30.0 34.0 3 31.93265197105141 33.0 31.0 34.0 30.0 34.0 4 35.65780332341419 37.0 35.0 37.0 33.0 37.0 5 35.56393769654681 37.0 35.0 37.0 33.0 37.0 6 35.636503835869455 37.0 35.0 37.0 33.0 37.0 7 36.04291284639018 37.0 35.0 37.0 35.0 37.0 8 36.07951054185051 37.0 35.0 37.0 35.0 37.0 9 37.93471326045886 39.0 38.0 39.0 35.0 39.0 10 37.353001092513566 39.0 37.0 39.0 34.0 39.0 11 36.94211187097475 39.0 35.0 39.0 33.0 39.0 12 35.687805194570025 37.0 35.0 39.0 32.0 39.0 13 35.06372492802086 37.0 35.0 39.0 30.0 39.0 14 35.9315504035057 37.0 35.0 40.0 30.0 41.0 15 36.35817845997839 37.0 35.0 40.0 31.0 41.0 16 36.638334248791296 37.0 35.0 40.0 32.0 41.0 17 36.616560936302236 37.0 35.0 40.0 32.0 41.0 18 36.594058778437045 37.0 35.0 40.0 32.0 41.0 19 36.50422971757619 37.0 35.0 40.0 32.0 41.0 20 36.31395127751655 36.0 35.0 40.0 32.0 41.0 21 36.10074514253982 36.0 35.0 40.0 31.0 41.0 22 35.99644933091089 36.0 35.0 40.0 31.0 41.0 23 36.0404803438098 35.0 35.0 40.0 31.0 41.0 24 36.05268812661085 35.0 35.0 40.0 31.0 41.0 25 35.99519837269803 35.0 35.0 40.0 31.0 41.0 26 35.85984741025997 35.0 35.0 40.0 31.0 41.0 27 35.77692804500432 35.0 34.0 40.0 31.0 41.0 28 35.811965437941005 36.0 35.0 40.0 31.0 41.0 29 35.83878483518739 36.0 35.0 40.0 31.0 41.0 30 35.80397530074303 36.0 35.0 40.0 31.0 41.0 31 35.59995442830154 36.0 35.0 40.0 30.0 41.0 32 35.388373482703884 35.0 34.0 40.0 30.0 41.0 33 35.25633778587941 35.0 34.0 40.0 30.0 41.0 34 35.17514622177422 35.0 34.0 40.0 29.0 41.0 35 35.07764693100264 35.0 34.0 40.0 29.0 41.0 36 34.85858136208073 35.0 34.0 40.0 27.0 41.0 37 34.756268372034064 35.0 34.0 40.0 27.0 41.0 38 34.711279146270066 35.0 34.0 40.0 27.0 41.0 39 34.737421004026004 35.0 34.0 40.0 27.0 41.0 40 34.631748987463254 35.0 34.0 40.0 27.0 41.0 41 34.59916069606997 35.0 34.0 40.0 26.0 41.0 42 34.50749065931081 35.0 34.0 40.0 26.0 41.0 43 34.33932807397705 35.0 33.0 40.0 25.0 41.0 44 34.175250342542235 35.0 34.0 40.0 24.0 41.0 45 34.14355537715862 35.0 34.0 40.0 24.0 41.0 46 34.05010774235995 35.0 34.0 40.0 24.0 41.0 47 33.962732310032415 35.0 33.0 39.0 24.0 41.0 48 33.893258104820944 35.0 33.0 39.0 23.0 41.0 49 33.843091511592114 35.0 33.0 39.0 24.0 41.0 50 33.653940292021026 35.0 33.0 39.0 24.0 41.0 51 33.20955587210952 35.0 33.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 0.0 13 3.0 14 5.0 15 13.0 16 36.0 17 98.0 18 223.0 19 475.0 20 876.0 21 1456.0 22 2358.0 23 3553.0 24 5188.0 25 7782.0 26 10060.0 27 11833.0 28 12968.0 29 14946.0 30 17491.0 31 21722.0 32 27365.0 33 36529.0 34 71177.0 35 135096.0 36 38922.0 37 45474.0 38 68703.0 39 128318.0 40 20.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.40719972475901 26.209611704985118 29.754546606870157 12.628641963385705 2 29.672306290101584 26.580070379603193 30.95268993740682 12.7949333928884 3 27.736414503268485 26.79117900925317 31.157158981849786 14.315247505628555 4 25.059907166526834 28.011504590367775 31.95134391240576 14.977244330699632 5 22.718246183747503 31.705075661091424 31.08865053448661 14.488027620674462 6 22.139847772419163 41.21990306205598 26.391898498850146 10.248350666674714 7 87.18680774779234 4.273176679362358 6.552817900321719 1.9871976725235858 8 88.01237980841779 3.094801204782916 6.36117532730137 2.5316436594979264 9 84.70269748239001 5.165295491721644 7.557206062544893 2.5748009633434537 10 55.26685096545605 23.776807325273282 12.339065508562047 8.617276200708625 11 51.510052935602054 18.31363589721922 18.858534583184948 11.317776583993771 12 45.85780422881218 20.595087914144127 20.36587132483869 13.181236532205007 13 21.3316291731302 45.651524388403665 21.147531583299635 11.869314855166504 14 13.37438810186331 48.367416537395954 25.268450501892282 12.989744858848454 15 10.245332673398803 25.10608246364827 52.46705860339343 12.181526259559494 16 12.591520646092 19.760009174699558 51.14351765224268 16.50495252696577 17 14.01918236526169 20.080821859928896 27.92881157460781 37.971184200201606 18 20.36813481979562 23.404839654017252 36.15148515449108 20.07554037169605 19 28.71741321760335 26.734138936338447 26.05388325194811 18.494564594110084 20 33.98728217633531 24.99185141815504 23.996668135423395 17.024198270086256 21 22.060927248254092 29.88039692647565 28.240570280009415 19.818105545260845 22 20.84165796478605 24.86237950661846 26.486965287041343 27.808997241554145 23 15.84114490592915 31.415801005595362 25.94040670477386 26.80264738370163 24 18.398592407936114 24.58170613195874 40.9479818678964 16.07171959220875 25 13.520308076753604 25.821648669366766 39.38315235433655 21.274890899543074 26 13.699275078015127 39.746367845092436 27.182763636802616 19.371593440089814 27 15.768411267979696 39.092821401193916 30.520664199960162 14.618103130866226 28 11.982187803685573 29.790913425844888 43.13678149125084 15.0901172792187 29 12.511996523271746 25.419199266024034 42.116699763992926 19.952104446711296 30 16.540715747285315 33.748558908210754 33.41597604920536 16.29474929529857 31 31.115963373633605 26.772165651614927 24.92651186373157 17.185359111019903 32 31.479329764053286 28.03866652985097 24.889239646774065 15.592764059321675 33 28.711226331387735 28.797390039414992 23.76654614813518 18.724837481062092 34 17.06735557393178 29.020419742504817 27.799037863743642 26.113186819819767 35 16.872242308644136 27.00470203352387 31.626155136926354 24.49690052090564 36 30.428917204372468 22.279429961430047 30.942881459260107 16.348771374937378 37 17.781261883348524 32.316068399799605 32.86790847029993 17.034761246551945 38 15.857894768610455 34.95092742933369 25.102008172725792 24.089169629330065 39 16.659473782692412 33.2145249980383 31.06556288592589 19.060438333343395 40 24.416471000102614 27.34226458143451 24.709065448202182 23.532198970260694 41 15.730837251694604 22.516040634261465 29.850971492035516 31.902150622008413 42 21.78055567292196 22.04598818153833 26.269820670839543 29.903635474700163 43 21.328912979181883 23.578977866037317 26.926234208350188 28.16587494643062 44 17.53831342463769 30.788360203533465 29.733420653938786 21.93990571789006 45 15.65870721240033 41.04697204734628 22.99937225739861 20.294948482854778 46 23.170341576478968 34.14783941861377 24.29288417545406 18.3889348294532 47 17.582979725121174 29.887338311010243 26.81849184840016 25.711190115468423 48 21.970538349640556 23.162343894297805 33.814200261961815 21.052917494099823 49 19.709910486319437 21.66768272440289 35.53430552956728 23.088101259710395 50 17.992974111653677 33.09682326027777 28.865445787786786 20.04475684028176 51 15.166019810107864 36.998334067711696 24.470945778732805 23.364700343447634 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 636.0 1 747.5 2 859.0 3 2924.0 4 4989.0 5 3622.0 6 2255.0 7 2497.5 8 2740.0 9 3068.0 10 3396.0 11 3628.5 12 3861.0 13 3839.5 14 3818.0 15 3535.5 16 3253.0 17 2914.5 18 2576.0 19 2606.5 20 2637.0 21 2378.5 22 2120.0 23 2077.5 24 2035.0 25 2595.0 26 3698.0 27 4241.0 28 4937.0 29 5633.0 30 7869.0 31 10105.0 32 10953.5 33 11802.0 34 13244.5 35 14687.0 36 16670.0 37 18653.0 38 22235.0 39 25817.0 40 41301.5 41 56786.0 42 70438.5 43 84091.0 44 87827.5 45 91564.0 46 84038.0 47 76512.0 48 72177.5 49 67843.0 50 59484.5 51 51126.0 52 44022.0 53 36918.0 54 30570.0 55 24222.0 56 19965.5 57 15709.0 58 13433.5 59 11158.0 60 9082.0 61 7006.0 62 5550.0 63 4094.0 64 3447.0 65 2800.0 66 2159.5 67 1519.0 68 1282.0 69 1045.0 70 727.5 71 410.0 72 349.0 73 288.0 74 222.0 75 128.0 76 100.0 77 67.5 78 35.0 79 25.5 80 16.0 81 13.0 82 10.0 83 9.5 84 9.0 85 5.0 86 1.0 87 2.5 88 4.0 89 3.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 662692.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.608129143753757 #Duplication Level Percentage of deduplicated Percentage of total 1 79.28136886094228 18.716847947627034 2 9.268979803924445 4.376465444837875 3 3.403610201235896 2.4105860755732427 4 1.5846880138732853 1.4964607713631668 5 0.9187432912469201 1.0844905134857332 6 0.5404016996841575 0.7654723869388577 7 0.4022782412651992 0.6647925670057669 8 0.30157962495459256 0.5695784586442276 9 0.24046882724735466 0.5109317215832305 >10 2.03377486688744 11.126348530697266 >50 0.8870688698967533 15.511481918304046 >100 1.1312691874044578 41.277752504023134 >500 0.004486620006703232 0.6122216722250117 >1k 0.0012818914304866375 0.8765694876914217 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3662 0.5525945688193007 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2131 0.32156718354831504 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.5089966379554907E-4 0.0 0.0 0.15044696480416242 0.0 2 1.5089966379554907E-4 0.0 0.0 0.5461058832760921 0.0 3 1.5089966379554907E-4 0.0 0.0 0.7901106396334949 0.0 4 1.5089966379554907E-4 0.0 0.0 1.2222872767439474 0.0 5 1.5089966379554907E-4 0.0 0.0 2.025224387800064 0.0 6 1.5089966379554907E-4 0.0 0.0 2.6703204505260363 0.0 7 1.5089966379554907E-4 0.0 0.0 3.04922950631666 0.0 8 1.5089966379554907E-4 0.0 0.0 3.940442920693173 0.0 9 1.5089966379554907E-4 0.0 0.0 4.183089580076415 0.0 10 1.5089966379554907E-4 0.0 0.0 4.703089821515878 0.0 11 1.5089966379554907E-4 0.0 0.0 5.611807596892674 0.0 12 1.5089966379554907E-4 0.0 0.0 6.230798017782017 0.0 13 1.5089966379554907E-4 0.0 0.0 6.4874783458982455 0.0 14 1.5089966379554907E-4 0.0 0.0 6.576660047201415 0.0 15 1.5089966379554907E-4 0.0 0.0 6.729068707634919 0.0 16 1.5089966379554907E-4 0.0 0.0 7.079005027976797 0.0 17 1.5089966379554907E-4 0.0 0.0 7.50137318694054 0.0 18 1.5089966379554907E-4 0.0 0.0 7.9770089272241105 0.0 19 1.5089966379554907E-4 0.0 0.0 8.241536037857708 0.0 20 1.5089966379554907E-4 0.0 0.0 8.514815328991448 0.0 21 1.5089966379554907E-4 0.0 0.0 8.889951893187183 0.0 22 1.5089966379554907E-4 0.0 0.0 9.28123472140904 0.0 23 1.5089966379554907E-4 0.0 0.0 9.696963295165778 0.0 24 1.5089966379554907E-4 0.0 0.0 9.97899476679966 0.0 25 1.5089966379554907E-4 0.0 0.0 10.205193362829188 0.0 26 1.5089966379554907E-4 0.0 0.0 10.431391958858717 0.0 27 1.5089966379554907E-4 0.0 0.0 10.649140173715693 0.0 28 1.5089966379554907E-4 0.0 0.0 10.873829773107266 0.0 29 1.5089966379554907E-4 0.0 0.0 11.135640689792544 0.0 30 1.5089966379554907E-4 0.0 0.0 11.462489361573702 0.0 31 1.5089966379554907E-4 0.0 0.0 11.780133153863334 0.0 32 1.5089966379554907E-4 0.0 0.0 12.04269856886759 0.0 33 1.5089966379554907E-4 0.0 0.0 12.305263983871845 0.0 34 1.5089966379554907E-4 0.0 0.0 12.586239157859156 0.0 35 1.5089966379554907E-4 0.0 0.0 12.952170842563362 0.0 36 1.5089966379554907E-4 0.0 0.0 13.239182003102497 0.0 37 1.5089966379554907E-4 0.0 0.0 13.53268184918484 0.0 38 1.5089966379554907E-4 0.0 0.0 13.790267575283842 0.0 39 1.5089966379554907E-4 0.0 0.0 14.080447628762682 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGAACC 30 2.1641044E-6 45.000004 6 TACCCTA 30 2.1641044E-6 45.000004 11 GATACCA 125 0.0 45.000004 9 GGTACCG 30 2.1641044E-6 45.000004 1 CACGGGT 30 2.1641044E-6 45.000004 4 GCGCGAG 85 0.0 45.000004 1 GCGCGAC 30 2.1641044E-6 45.000004 9 TTTCGCG 30 2.1641044E-6 45.000004 2 TTCACGC 30 2.1641044E-6 45.000004 40 TAACGTG 30 2.1641044E-6 45.000004 15 CGCGACC 30 2.1641044E-6 45.000004 10 ATGTCGC 30 2.1641044E-6 45.000004 33 TCTCGCG 215 0.0 45.000004 32 AACGACG 30 2.1641044E-6 45.000004 1 CTCGCGC 215 0.0 45.000004 33 ACGCTCG 30 2.1641044E-6 45.000004 1 ACTCGCG 30 2.1641044E-6 45.000004 1 GTTCACG 30 2.1641044E-6 45.000004 39 CATCGGT 30 2.1641044E-6 45.000004 37 GGCGCGA 30 2.1641044E-6 45.000004 8 >>END_MODULE