SRR1548119_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548119_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1362952
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4422	0.3244428270401305	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3062	0.2246594157387788	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1827	0.13404727385850712	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1817	0.13331357230482072	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1658	0.12164771760120678	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAC	20	7.0337474E-4	45.000004	17
TAGACCC	20	7.0337474E-4	45.000004	22
CGGCACA	25	3.891188E-5	45.000004	19
CCTAACG	25	3.891188E-5	45.000004	33
TTATCCG	30	2.1657997E-6	45.000004	1
CCGTCAG	25	3.891188E-5	45.000004	25
ATATACG	40	6.8175723E-9	45.000004	1
TCCGTCG	30	2.1657997E-6	45.000004	4
TATAGCG	90	0.0	45.000004	1
CCGCGAC	20	7.0337474E-4	45.000004	24
ATCGGGT	30	2.1657997E-6	45.000004	22
CGCAATA	25	3.891188E-5	45.000004	28
TGAATCG	20	7.0337474E-4	45.000004	41
GCGCTAA	20	7.0337474E-4	45.000004	43
TATCGTT	20	7.0337474E-4	45.000004	15
CAATACG	20	7.0337474E-4	45.000004	1
AGTACGG	125	0.0	45.000004	2
GCGTAAT	25	3.891188E-5	45.000004	26
GATTACG	105	0.0	45.0	1
CGGTCTA	215	0.0	43.95349	31