SRR1548118_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548118_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1520465
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31368	2.063053079156705	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTT	2777	0.18264149454278789	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2677	0.1760645591973508	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2193	0.1442321921254353	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTC	2003	0.13173601496910484	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCT	2002	0.1316702456156505	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1806	0.1187794523385938	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1693	0.11134751539824987	No Hit
CGCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTG	1583	0.10411288651826908	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGACGG	30	2.1659653E-6	45.000004	2
AGCGCGT	20	7.034006E-4	45.0	37
ATCGCCG	20	7.034006E-4	45.0	26
TAGTACG	35	1.2122837E-7	45.0	1
CGTTTTT	10875	0.0	44.068966	1
TACGGGA	665	0.0	42.293232	4
CGACGGT	635	0.0	41.811024	28
AACGCCG	205	0.0	41.707317	13
TCACGAC	645	0.0	41.51163	25
GACGGTC	645	0.0	41.51163	29
CGCATCG	190	0.0	41.44737	21
ACGGTCT	645	0.0	41.162792	30
CACGACG	640	0.0	41.132812	26
GCGCGAC	285	0.0	41.05263	9
GGCCGAT	220	0.0	40.90909	8
CGGTCTA	655	0.0	40.87786	31
CCAATCG	105	0.0	40.714287	24
CCGCTCG	100	0.0	40.5	19
CGCCGAC	100	0.0	40.5	13
TAACGCC	230	0.0	40.108692	12