##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548114_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1671244 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.492495410604317 31.0 31.0 33.0 30.0 34.0 2 31.902445124709498 31.0 31.0 34.0 30.0 34.0 3 31.888269456763943 33.0 31.0 34.0 30.0 34.0 4 35.6606043163057 37.0 35.0 37.0 33.0 37.0 5 35.59547498749435 37.0 35.0 37.0 33.0 37.0 6 35.66647120348674 37.0 35.0 37.0 33.0 37.0 7 36.06378123122656 37.0 35.0 37.0 35.0 37.0 8 36.10500142408888 37.0 35.0 37.0 35.0 37.0 9 37.937237171831285 39.0 38.0 39.0 35.0 39.0 10 37.314746978897155 39.0 37.0 39.0 34.0 39.0 11 36.9907589795386 39.0 37.0 39.0 33.0 39.0 12 36.59548994641118 39.0 35.0 39.0 32.0 39.0 13 36.45592385073634 39.0 35.0 39.0 32.0 39.0 14 37.53978413684656 40.0 36.0 41.0 32.0 41.0 15 37.69766293850569 40.0 36.0 41.0 33.0 41.0 16 37.788903355823564 40.0 36.0 41.0 33.0 41.0 17 37.71872509340348 40.0 36.0 41.0 33.0 41.0 18 37.59768053019188 39.0 36.0 41.0 33.0 41.0 19 37.52291347044477 39.0 36.0 41.0 32.0 41.0 20 37.372691240776334 39.0 35.0 41.0 32.0 41.0 21 37.26522817733377 39.0 35.0 41.0 32.0 41.0 22 37.178572967202875 39.0 35.0 41.0 32.0 41.0 23 37.08430725854513 39.0 35.0 41.0 32.0 41.0 24 37.09311626548846 39.0 35.0 41.0 32.0 41.0 25 37.07735555071552 39.0 35.0 41.0 32.0 41.0 26 36.95932012321361 39.0 35.0 41.0 32.0 41.0 27 36.90917544057002 39.0 35.0 41.0 31.0 41.0 28 36.862547898451695 39.0 35.0 41.0 31.0 41.0 29 36.820464276909895 39.0 35.0 41.0 31.0 41.0 30 36.71999360955073 38.0 35.0 41.0 31.0 41.0 31 36.62112175122244 39.0 35.0 41.0 31.0 41.0 32 36.4701796984761 39.0 35.0 41.0 30.0 41.0 33 36.33708722364897 39.0 35.0 41.0 30.0 41.0 34 36.170936140982406 39.0 35.0 41.0 30.0 41.0 35 36.01610476986006 38.0 35.0 41.0 29.0 41.0 36 35.8450334002695 38.0 35.0 41.0 29.0 41.0 37 35.772949371845165 38.0 35.0 41.0 28.0 41.0 38 35.67347736177363 38.0 35.0 41.0 27.0 41.0 39 35.62204501556924 38.0 35.0 40.0 27.0 41.0 40 35.5322568098973 38.0 35.0 40.0 27.0 41.0 41 35.462658953450244 38.0 35.0 40.0 27.0 41.0 42 35.411091976994385 38.0 35.0 40.0 26.0 41.0 43 35.32901359705704 38.0 34.0 40.0 26.0 41.0 44 35.17242963923879 38.0 34.0 40.0 26.0 41.0 45 35.162204322049924 38.0 34.0 40.0 26.0 41.0 46 35.085681085466874 38.0 34.0 40.0 25.0 41.0 47 35.02490180966992 38.0 34.0 40.0 25.0 41.0 48 34.906694653802795 38.0 34.0 40.0 24.0 41.0 49 34.79461048177286 38.0 34.0 40.0 24.0 41.0 50 34.66452115908868 37.0 34.0 40.0 24.0 41.0 51 34.305058986000844 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 4.0 14 12.0 15 26.0 16 86.0 17 214.0 18 525.0 19 1103.0 20 1930.0 21 3177.0 22 5191.0 23 7820.0 24 11837.0 25 17998.0 26 24026.0 27 27724.0 28 29607.0 29 32658.0 30 37427.0 31 44989.0 32 55987.0 33 72204.0 34 114833.0 35 171194.0 36 118636.0 37 154983.0 38 248291.0 39 488692.0 40 67.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.594960400755365 24.709497835145555 30.94066455885556 14.754877205243519 2 31.35568474740971 25.883653135029956 29.544159919197917 13.216502198362418 3 27.61098917931792 24.790934178372517 34.08233627166351 13.515740370646057 4 25.064323342372507 27.08240089418421 33.68329220628466 14.16998355715862 5 23.390540220338863 31.82629227090718 31.13417310697899 13.648994401774967 6 22.025030456354667 40.305784194288805 27.90119216583575 9.76799318352078 7 89.01465016478743 2.577900055288157 7.186622659527872 1.2208271203965428 8 90.05220063617281 1.9466337650277281 6.771841813643011 1.2293237851564462 9 84.97185330209113 5.071671162319805 7.916797307873656 2.0396782277154024 10 38.762801841023816 37.77240187548916 14.675535110372874 8.78926117311416 11 28.708195811024602 22.915923707130737 31.363224041492444 17.012656440352217 12 29.30625330592062 22.37584697387096 29.99855197685078 18.319347743357643 13 23.657945817606528 28.226399017737684 30.448994880460305 17.666660284195483 14 17.34635995701406 31.469073336987297 31.507248492739542 19.677318213259102 15 16.48023867250982 29.720136616795635 37.51139869462508 16.28822601606947 16 21.004832328493027 28.082254895155945 35.39668654008631 15.516226236264721 17 21.23825126672108 27.441474733791114 29.641213371596248 21.67906062789156 18 21.452762134074977 28.339488428978655 32.66076048739741 17.546988949548957 19 24.029285969014698 29.24534059658554 28.77413471641484 17.95123871798493 20 25.723772231942192 29.51089128816618 28.805548441759555 15.959788038132075 21 24.185816074732355 27.47988923221265 32.093398689838224 16.240896003216765 22 23.429612911100953 23.69642015169538 32.10267321827334 20.77129371893033 23 20.16473955927441 27.380203010452092 32.541747345091444 19.913310085182058 24 18.790194609524402 27.349567148782583 35.7104647795295 18.149773462163516 25 18.956358257681106 29.78697305719572 33.03604979284892 18.220618892274256 26 18.86600640002298 34.04900780496444 28.723753084528653 18.361232710483925 27 17.98414833501272 32.93845781944468 31.86494611199801 17.212447733544593 28 16.862648422372793 29.482648853189602 35.50594646861859 18.148756255819016 29 17.470638638044473 27.72707037392505 35.22920650724849 19.57308448078198 30 18.93978377783256 29.45919327159888 32.75637788377998 18.84464506678857 31 22.683402303912533 28.227296552747532 29.81389910749119 19.275402035848746 32 23.045527762552926 28.736677588670474 29.96049649243318 18.257298156343417 33 22.75305102067681 28.467596592717758 29.13434543370088 19.64500695290454 34 19.355761337063885 28.657515000801798 31.002414967533166 20.984308694601147 35 19.418528952085993 28.414283013132728 31.16786058768199 20.999327447099287 36 22.28435823853369 28.98182431769388 30.065448252918188 18.66836919085424 37 19.679771475619358 30.608397098209476 30.422607351170743 19.28922407500042 38 19.23261953371261 31.00510757256271 29.50706180545749 20.255211088267185 39 19.086321327107232 30.78425412447255 30.187752356926932 19.941672191493282 40 21.459882578486443 28.77598962210186 29.54074928616049 20.223378513251205 41 18.975565506891872 27.61152770032383 30.442053943050805 22.970852849733493 42 20.12111935779575 27.911424064948026 29.252520876664327 22.714935700591894 43 19.936705831105453 28.595525249454894 29.803667208378908 21.66410171106074 44 19.63028737874302 30.11337662244412 29.741856964033975 20.514479034778883 45 18.72892288618538 32.69971350682486 27.725095796903382 20.846267810086378 46 20.08384173705336 31.36471993317553 28.043720725399762 20.507717604371354 47 19.724648226111807 29.205490042148245 29.704998192962844 21.3648635387771 48 20.120580836789838 28.49093250297383 30.92468843568025 20.46379822455608 49 19.940654985148786 28.250632463003605 30.981831497973968 20.82688105387364 50 18.666454449499895 30.552091735258287 30.204027658438864 20.577426156802954 51 18.35141966104291 31.510898468446257 29.008211846983446 21.129470023527382 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 866.0 1 1627.5 2 2389.0 3 13440.5 4 24492.0 5 17343.5 6 10195.0 7 9540.0 8 8885.0 9 9255.5 10 9626.0 11 10038.5 12 10451.0 13 10261.5 14 10072.0 15 9457.5 16 8843.0 17 8593.0 18 8343.0 19 8382.5 20 8422.0 21 8830.0 22 9238.0 23 10047.5 24 10857.0 25 13971.0 26 19663.5 27 22242.0 28 28915.5 29 35589.0 30 42024.5 31 48460.0 32 53886.5 33 59313.0 34 63408.0 35 67503.0 36 73466.0 37 79429.0 38 86446.5 39 93464.0 40 104863.0 41 116262.0 42 125485.5 43 134709.0 44 135829.0 45 136949.0 46 136857.0 47 136765.0 48 133994.0 49 131223.0 50 121368.0 51 111513.0 52 100768.0 53 90023.0 54 81919.0 55 73815.0 56 66201.0 57 58587.0 58 52396.0 59 46205.0 60 40184.5 61 34164.0 62 28255.5 63 22347.0 64 18403.0 65 14459.0 66 11369.5 67 8280.0 68 6632.0 69 4984.0 70 3737.5 71 2491.0 72 1945.5 73 1400.0 74 1043.5 75 520.0 76 353.0 77 235.5 78 118.0 79 83.5 80 49.0 81 46.5 82 44.0 83 34.5 84 25.0 85 20.5 86 16.0 87 10.5 88 5.0 89 5.5 90 6.0 91 3.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1671244.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.10900826598626 #Duplication Level Percentage of deduplicated Percentage of total 1 78.83205843848118 19.005627485180547 2 7.228487781232806 3.485433433366448 3 2.6404882897963096 1.9097866201481746 4 1.4045973900939561 1.3545380035263166 5 0.9202770975003703 1.1093484075317137 6 0.6663251076043555 0.9638662516240553 7 0.5097232212746969 0.8602244948553769 8 0.4511457003322738 0.8701340334779959 9 0.3596618559212526 0.7803981591628893 >10 4.962633522925286 29.060119777685156 >50 1.6419687393441635 27.788343905744604 >100 0.38089248514283114 11.54209250979651 >500 0.0012431216789901276 0.20577697810898837 >1k 2.4862433579802553E-4 0.09015105594987431 >5k 0.0 0.0 >10k+ 2.4862433579802553E-4 0.9741588838413281 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16252 0.9724492653376765 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.019027742208797757 0.0 2 0.0 0.0 0.0 0.07054625177412753 0.0 3 0.0 0.0 0.0 0.1304417547647142 0.0 4 0.0 0.0 0.0 0.21104039864914997 0.0 5 0.0 0.0 0.0 0.4190291782648135 0.0 6 0.0 0.0 0.0 0.6741684637312086 0.0 7 0.0 0.0 0.0 0.8573852770750411 0.0 8 0.0 0.0 0.0 1.1553669003448928 0.0 9 0.0 0.0 0.0 1.2809619660564227 0.0 10 0.0 0.0 0.0 1.470521360136521 0.0 11 0.0 0.0 0.0 1.760604675319702 0.0 12 0.0 0.0 0.0 1.9730811299846103 0.0 13 0.0 0.0 0.0 2.067980498359306 0.0 14 0.0 0.0 0.0 2.1157293608832703 0.0 15 0.0 0.0 0.0 2.1799330319211316 0.0 16 0.0 0.0 0.0 2.307383003319683 0.0 17 0.0 0.0 0.0 2.4795302182087116 0.0 18 0.0 0.0 0.0 2.66322571689113 0.0 19 0.0 0.0 0.0 2.7978559683684727 0.0 20 0.0 0.0 0.0 2.93440096120016 0.0 21 0.0 0.0 0.0 3.1124719071541915 0.0 22 0.0 0.0 0.0 3.3291966941990516 0.0 23 0.0 0.0 0.0 3.547596879928963 0.0 24 0.0 0.0 0.0 3.7032892863040945 0.0 25 0.0 0.0 0.0 3.8444416255196727 0.0 26 0.0 0.0 0.0 3.978772698660399 0.0 27 0.0 0.0 0.0 4.123694684917343 0.0 28 0.0 0.0 0.0 4.28004528363303 0.0 29 0.0 0.0 0.0 4.455603131559485 0.0 30 0.0 0.0 0.0 4.669096792568888 0.0 31 0.0 0.0 0.0 4.865537288391162 0.0 32 0.0 0.0 0.0 5.052523748776361 0.0 33 0.0 0.0 0.0 5.22963732405322 0.0 34 0.0 0.0 0.0 5.424342585523119 0.0 35 0.0 0.0 0.0 5.639750987886868 0.0 36 0.0 0.0 0.0 5.846662725490712 0.0 37 0.0 0.0 0.0 6.062489977525724 0.0 38 0.0 0.0 0.0 6.288848307009629 0.0 39 0.0 0.0 0.0 6.5990962420807495 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTCGCG 35 1.2123746E-7 45.000004 1 ACTCGCG 20 7.034207E-4 45.0 1 TACTCGC 25 3.8915696E-5 45.0 45 TACTCCG 20 7.034207E-4 45.0 43 TATCACG 30 2.1660962E-6 44.999996 1 CGGTCTA 320 0.0 44.296875 31 CGTTTTT 6945 0.0 43.056156 1 CGACGGT 335 0.0 42.985073 28 GATCGAC 55 6.184564E-11 40.909092 9 CGCCGGT 55 6.184564E-11 40.909092 28 CTCGCGC 200 0.0 40.5 33 TGCGCGG 195 0.0 40.384617 2 TCGCGAG 85 0.0 39.705883 1 ATGCGAG 125 0.0 39.600002 1 GACGGTC 365 0.0 39.452053 29 ACGGTCT 365 0.0 39.452053 30 TAGTTCG 40 3.4594814E-7 39.375 1 TCGCGCG 40 3.4594814E-7 39.375 1 TATAGCG 120 0.0 39.374996 1 CGGAATC 35 6.249991E-6 38.57143 45 >>END_MODULE