##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548111_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1716612 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.517032387050772 31.0 31.0 33.0 30.0 34.0 2 31.912586536736317 31.0 31.0 34.0 30.0 34.0 3 32.01679354449345 33.0 31.0 34.0 30.0 34.0 4 35.72319545709805 37.0 35.0 37.0 35.0 37.0 5 35.61658779036847 37.0 35.0 37.0 33.0 37.0 6 35.666533846903086 37.0 35.0 37.0 33.0 37.0 7 36.08650819171717 37.0 35.0 37.0 35.0 37.0 8 36.124799896540395 37.0 35.0 37.0 35.0 37.0 9 37.95288451904099 39.0 38.0 39.0 35.0 39.0 10 37.32635621794558 39.0 37.0 39.0 34.0 39.0 11 36.90957304271437 39.0 37.0 39.0 33.0 39.0 12 36.31470943929088 38.0 35.0 39.0 32.0 39.0 13 36.07029544241797 38.0 35.0 39.0 32.0 39.0 14 37.128088933317485 39.0 35.0 41.0 32.0 41.0 15 37.36042390476124 39.0 35.0 41.0 32.0 41.0 16 37.48678559860935 39.0 35.0 41.0 33.0 41.0 17 37.42062213243295 39.0 35.0 41.0 32.0 41.0 18 37.35258812125279 39.0 35.0 41.0 32.0 41.0 19 37.30977879683935 39.0 35.0 41.0 32.0 41.0 20 37.20920044832496 39.0 35.0 41.0 32.0 41.0 21 37.075342593434044 39.0 35.0 41.0 32.0 41.0 22 36.974474138593926 39.0 35.0 41.0 32.0 41.0 23 36.894586546057 39.0 35.0 41.0 32.0 41.0 24 36.92246413283841 39.0 35.0 41.0 32.0 41.0 25 36.91597868359303 39.0 35.0 41.0 32.0 41.0 26 36.78888473341675 38.0 35.0 41.0 31.0 41.0 27 36.73107667894667 38.0 35.0 41.0 31.0 41.0 28 36.71825083361878 38.0 35.0 41.0 31.0 41.0 29 36.7059277227469 38.0 35.0 41.0 31.0 41.0 30 36.642802799933825 38.0 35.0 41.0 31.0 41.0 31 36.564699536062896 38.0 35.0 41.0 31.0 41.0 32 36.46549249335319 38.0 35.0 41.0 30.0 41.0 33 36.37065044401414 38.0 35.0 41.0 30.0 41.0 34 36.316720959657744 38.0 35.0 41.0 30.0 41.0 35 36.24457128343504 38.0 35.0 41.0 30.0 41.0 36 36.10797605982016 38.0 35.0 41.0 30.0 41.0 37 36.02926345615666 38.0 35.0 40.0 30.0 41.0 38 35.97182648146465 38.0 35.0 40.0 30.0 41.0 39 35.94074374407263 38.0 35.0 40.0 30.0 41.0 40 35.81443273145009 38.0 35.0 40.0 29.0 41.0 41 35.7595933152046 38.0 35.0 40.0 29.0 41.0 42 35.71881473507118 38.0 35.0 40.0 29.0 41.0 43 35.60407651816485 38.0 34.0 40.0 29.0 41.0 44 35.43142189382341 38.0 34.0 40.0 28.0 41.0 45 35.4120605005674 38.0 34.0 40.0 28.0 41.0 46 35.33846437051588 38.0 34.0 40.0 27.0 41.0 47 35.248034500516134 37.0 34.0 40.0 27.0 41.0 48 35.16484971560259 37.0 34.0 40.0 27.0 41.0 49 35.0740674071951 37.0 34.0 40.0 27.0 41.0 50 34.892033260865006 37.0 34.0 40.0 26.0 41.0 51 34.51655936227872 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 5.0 14 11.0 15 30.0 16 81.0 17 199.0 18 491.0 19 986.0 20 1731.0 21 2942.0 22 4511.0 23 6738.0 24 9966.0 25 14294.0 26 19281.0 27 23580.0 28 27747.0 29 32696.0 30 39707.0 31 48842.0 32 61444.0 33 79280.0 34 135375.0 35 215343.0 36 114530.0 37 150358.0 38 242421.0 39 483914.0 40 106.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.113779933962945 24.427768185239294 31.26361693848115 12.194834942316609 2 28.111361216163 25.9489622582156 32.36427334773379 13.575403177887607 3 28.969446794033832 26.301866700221133 31.501061393023 13.227625112722036 4 25.548114541899974 27.897043711683246 31.477759680114087 15.077082066302694 5 23.990628051068033 32.68216696609368 29.32409886450753 14.003106118330757 6 22.77014258318129 40.975246590376855 25.8861058876438 10.36850493879805 7 91.66084123843945 2.924772750044856 4.168152150864611 1.2462338606510965 8 92.7757699468488 1.9979471190927245 3.8476370898024714 1.3786458442560112 9 88.0595032540842 5.19034004189648 5.029616477107232 1.7205402269120804 10 45.31967619939742 37.64246084729688 9.395367153439448 7.642495799866249 11 35.56831712699201 23.11920224255685 26.312235962465603 15.000244667985543 12 34.38732806248587 22.694528524791856 26.006692251947438 16.911451160774828 13 23.83840961149054 32.00822317448556 26.57245784137592 17.580909372647984 14 16.244497883039383 35.63595034871013 28.47079013778303 19.648761630467458 15 14.815753356029202 29.374838344366694 39.34202953259094 16.467378767013162 16 20.085552238945084 25.65943847532232 38.01068616554003 16.244323120192565 17 19.91632354894408 25.613301083762668 27.407999012007373 27.062376355285878 18 21.418876251593254 28.74004143044555 31.003686330982188 18.837395986979004 19 26.033372713228147 28.215286855736764 27.320326317187575 18.43101411384751 20 29.06760525966264 27.5277698163592 26.665664693011582 16.73896023096658 21 24.613948871381535 28.096215102772206 29.49606550577533 17.793770520070932 22 23.68549212052578 23.826292720777907 29.015642439875755 23.47257271882056 23 20.73625257192656 28.188023851633332 29.17788061600408 21.89784296043602 24 20.180390210484372 25.73627587363947 35.5378501373636 18.54548377851256 25 18.622029905418348 28.687088287860043 32.52383182687759 20.167049979844016 26 18.629369944984656 35.79480977646667 26.10951106015803 19.46630921839064 27 18.389420556305094 34.71500840026751 29.37711026137531 17.518460782052088 28 15.754171589153518 29.98907149664572 36.51972606506304 17.73703084913772 29 17.590696092069727 26.513213236305 35.820208643537384 20.075882028087886 30 19.282400449257025 29.453423371152017 32.34906898006072 18.915107199530237 31 25.740470181963076 27.51938119971199 27.19927391862576 19.540874699699177 32 25.974011599592682 28.640135336348578 27.82638126728696 17.55947179677178 33 24.149370970260023 28.93589232744499 27.600762432046377 19.313974270248607 34 19.321430818379458 27.45215575796977 30.150552367104506 23.07586105654627 35 19.15121180557983 27.673289013475383 31.386358711228862 21.789140469715928 36 25.205928887832545 26.320857596241897 28.66291276071704 19.810300755208516 37 19.85399146691273 31.581627065405577 30.203913289665923 18.360468178015765 38 19.14818258290167 31.489294028004 27.23061472248825 22.13190866660608 39 20.121961165365263 29.603136876591797 28.882822676294932 21.392079281748003 40 21.927902170088522 27.03173460281065 28.76549855179854 22.27486467530228 41 17.297793560804656 26.272098761979993 30.093987459018113 26.33612021819724 42 21.002649404757744 26.90695393018341 27.366288945900415 24.724107719158436 43 21.612804757277708 26.663218013156147 27.726125647496346 23.9978515820698 44 19.10926872234378 29.946778887716036 29.92883656877617 21.015115821164013 45 18.871824267801927 33.09885984718737 26.398568808793133 21.630747076217574 46 20.660347242125766 30.826185532898524 27.775467024580973 20.738000200394733 47 19.74633755327354 28.299056513644317 28.980049073407386 22.974556859674756 48 21.39714740430569 25.31212644441493 31.8843163160924 21.406409835186984 49 20.025026039664176 25.66153562948412 31.530887585546413 22.78255074530529 50 18.60548568925302 30.314538171701 29.431403252453087 21.64857288659289 51 17.820159709940278 30.644315663644434 28.208937138969087 23.3265874874462 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 693.0 1 1704.5 2 2716.0 3 6699.0 4 10682.0 5 7669.5 6 4657.0 7 4435.0 8 4213.0 9 4310.5 10 4408.0 11 4452.0 12 4496.0 13 4656.5 14 4817.0 15 4460.5 16 4104.0 17 4378.0 18 4652.0 19 4560.5 20 4469.0 21 5640.0 22 6811.0 23 8513.5 24 10216.0 25 12718.0 26 19358.5 27 23497.0 28 27876.0 29 32255.0 30 38703.0 31 45151.0 32 50439.0 33 55727.0 34 58114.5 35 60502.0 36 67358.0 37 74214.0 38 82003.5 39 89793.0 40 107945.5 41 126098.0 42 142152.0 43 158206.0 44 160380.5 45 162555.0 46 158601.0 47 154647.0 48 146671.0 49 138695.0 50 130490.0 51 122285.0 52 109679.5 53 97074.0 54 85746.0 55 74418.0 56 67292.5 57 60167.0 58 56174.0 59 52181.0 60 46585.0 61 40989.0 62 35346.0 63 29703.0 64 22945.0 65 16187.0 66 12722.5 67 9258.0 68 7049.5 69 4841.0 70 3684.5 71 2528.0 72 2059.5 73 1591.0 74 1306.0 75 805.0 76 589.0 77 363.0 78 137.0 79 95.5 80 54.0 81 38.5 82 23.0 83 26.5 84 30.0 85 24.5 86 19.0 87 15.0 88 11.0 89 8.0 90 5.0 91 3.0 92 1.0 93 2.5 94 4.0 95 3.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1716612.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.280421555971913 #Duplication Level Percentage of deduplicated Percentage of total 1 79.7923383547914 16.18222258771916 2 8.511622692529379 3.4523859265974504 3 2.7159159642350432 1.6523976199584185 4 1.2519806191088134 1.0156277894173376 5 0.7019689844381414 0.7118113461811497 6 0.44986868710840566 0.5474115971634055 7 0.33720174740482173 0.47870155107461004 8 0.263156692985131 0.4269542935211147 9 0.19592588039594885 0.3576113503339298 >10 2.9913743465591747 15.27868768207413 >50 1.5343610784875352 22.868456554043718 >100 1.249962812218247 36.02057786712153 >500 0.0034577117903414256 0.4707647979751249 >1k 5.762852983902376E-4 0.1469094714634389 >5k 2.881426491951188E-4 0.3894795653555371 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6665 0.38826479134481173 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.1650856454457967E-4 0.0 0.0 0.05219583691597169 0.0 2 1.1650856454457967E-4 0.0 0.0 0.1907245201594769 0.0 3 1.1650856454457967E-4 0.0 0.0 0.2816594547865214 0.0 4 1.1650856454457967E-4 0.0 0.0 0.4239164120954531 0.0 5 1.1650856454457967E-4 0.0 0.0 0.7596940951129317 0.0 6 1.1650856454457967E-4 0.0 0.0 1.0090806775206045 0.0 7 1.1650856454457967E-4 0.0 0.0 1.1855328985233704 0.0 8 1.1650856454457967E-4 0.0 0.0 1.5902836517512402 0.0 9 1.1650856454457967E-4 0.0 0.0 1.7059766563440077 0.0 10 1.1650856454457967E-4 0.0 0.0 1.974761914748353 0.0 11 1.1650856454457967E-4 0.0 0.0 2.4541946578492984 0.0 12 1.1650856454457967E-4 0.0 0.0 2.7978366689735363 0.0 13 1.1650856454457967E-4 0.0 0.0 2.9325788238693424 0.0 14 1.1650856454457967E-4 0.0 0.0 2.9807551153085265 0.0 15 1.1650856454457967E-4 0.0 0.0 3.067670504458783 0.0 16 1.1650856454457967E-4 0.0 0.0 3.272550815210426 0.0 17 1.1650856454457967E-4 0.0 0.0 3.5501324702378874 0.0 18 1.1650856454457967E-4 0.0 0.0 3.8448408842534016 0.0 19 1.1650856454457967E-4 0.0 0.0 4.046051175221891 0.0 20 1.1650856454457967E-4 0.0 0.0 4.2516887916430735 0.0 21 1.1650856454457967E-4 0.0 0.0 4.521580881410593 0.0 22 1.1650856454457967E-4 0.0 0.0 4.837202582761859 0.0 23 1.1650856454457967E-4 0.0 0.0 5.151251418491773 0.0 24 1.1650856454457967E-4 0.0 0.0 5.378792645047337 0.0 25 1.1650856454457967E-4 0.0 0.0 5.5684685881259135 0.0 26 1.1650856454457967E-4 0.0 0.0 5.7554065799376914 0.0 27 1.1650856454457967E-4 0.0 0.0 5.932266580916363 0.0 28 1.1650856454457967E-4 0.0 0.0 6.124330949568103 0.0 29 1.1650856454457967E-4 0.0 0.0 6.35297900748684 0.0 30 1.1650856454457967E-4 0.0 0.0 6.629803356844762 0.0 31 1.1650856454457967E-4 0.0 0.0 6.884374570374669 0.0 32 1.1650856454457967E-4 0.0 0.0 7.113372153987039 0.0 33 1.7476284681686952E-4 0.0 0.0 7.337068597912633 0.0 34 1.7476284681686952E-4 0.0 0.0 7.570959541235876 0.0 35 1.7476284681686952E-4 0.0 0.0 7.8471430934888025 0.0 36 1.7476284681686952E-4 0.0 0.0 8.099500644292362 0.0 37 1.7476284681686952E-4 0.0 0.0 8.369975276882604 0.0 38 1.7476284681686952E-4 0.0 0.0 8.617963756515742 0.0 39 1.7476284681686952E-4 0.0 0.0 8.880108026741047 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCCGTA 20 7.0342596E-4 45.000004 30 CCCGTAA 20 7.0342596E-4 45.000004 29 ACCGTTA 20 7.0342596E-4 45.000004 42 TACCGTA 20 7.0342596E-4 45.000004 45 AGTCGAC 20 7.0342596E-4 45.000004 28 ACGGTCG 20 7.0342596E-4 45.000004 31 GTCGATC 35 1.2123928E-7 45.0 44 CGTTCGG 35 1.2123928E-7 45.0 2 TAGTGCG 165 0.0 45.0 1 TAGTCCG 45 3.8562575E-10 45.0 1 TATATCG 30 2.1661308E-6 44.999996 40 CCTGTCG 30 2.1661308E-6 44.999996 9 CTACGCG 30 2.1661308E-6 44.999996 1 CGGTCTA 440 0.0 43.977272 31 TATCGCG 175 0.0 43.714287 1 CTAGCGG 165 0.0 43.636364 2 ACGTTAG 100 0.0 42.75 1 AATGCGG 330 0.0 42.272728 2 TTCGCGG 160 0.0 42.187504 2 GCGAACG 75 0.0 42.0 1 >>END_MODULE