SRR1548110_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548110_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1450067
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5196	0.3583282703488873	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2079	0.14337268553797858	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2013	0.1388211717113761	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1585	0.10930529416916597	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATA	35	1.2122291E-7	45.000004	34
TCCTCGA	30	2.1658961E-6	45.000004	39
GATCACG	35	1.2122291E-7	45.000004	1
GGTGCGT	30	2.1658961E-6	45.000004	8
TCCGTAC	35	1.2122291E-7	45.000004	21
CGAGCCT	35	1.2122291E-7	45.000004	35
ATACGAC	35	1.2122291E-7	45.000004	10
AGGGCGT	30	2.1658961E-6	45.000004	6
TCGACAG	60	0.0	45.000004	1
CGATAAG	30	2.1658961E-6	45.000004	10
CACCCGT	30	2.1658961E-6	45.000004	25
CGAAGCA	30	2.1658961E-6	45.000004	28
ACGCGAG	20	7.0338993E-4	45.0	1
TCCGCGA	25	3.8913127E-5	45.0	37
CGTATCT	25	3.8913127E-5	45.0	36
GATCGAC	20	7.0338993E-4	45.0	11
CGACGTG	20	7.0338993E-4	45.0	15
TTTACGC	20	7.0338993E-4	45.0	21
CGAAACG	25	3.8913127E-5	45.0	37
CCGATAT	20	7.0338993E-4	45.0	28