##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548110_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1450067 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.62175402929658 31.0 31.0 33.0 30.0 34.0 2 32.044076584047495 33.0 31.0 34.0 30.0 34.0 3 32.12882025451238 33.0 31.0 34.0 30.0 34.0 4 35.81316242628789 37.0 35.0 37.0 35.0 37.0 5 35.71751581133837 37.0 35.0 37.0 33.0 37.0 6 35.77821024821612 37.0 35.0 37.0 35.0 37.0 7 36.116581509681964 37.0 35.0 37.0 35.0 37.0 8 36.1426134102769 37.0 35.0 37.0 35.0 37.0 9 37.97572456996814 39.0 38.0 39.0 35.0 39.0 10 37.45941946130765 39.0 37.0 39.0 35.0 39.0 11 37.07628475098047 39.0 37.0 39.0 33.0 39.0 12 36.19198768056924 38.0 35.0 39.0 32.0 39.0 13 35.815763685402125 38.0 35.0 39.0 31.0 39.0 14 36.82792588204545 39.0 35.0 41.0 31.0 41.0 15 37.11687873732731 39.0 35.0 41.0 32.0 41.0 16 37.30484522439308 39.0 35.0 41.0 33.0 41.0 17 37.258356338017485 39.0 35.0 41.0 33.0 41.0 18 37.21556659106096 38.0 35.0 41.0 33.0 41.0 19 37.14875174733305 38.0 35.0 41.0 32.0 41.0 20 36.99234793978485 38.0 35.0 41.0 32.0 41.0 21 36.83124090128249 38.0 35.0 41.0 32.0 41.0 22 36.726478155836936 38.0 35.0 41.0 32.0 41.0 23 36.68401460070466 38.0 35.0 41.0 32.0 41.0 24 36.71921918090681 38.0 35.0 41.0 32.0 41.0 25 36.72802842903121 38.0 35.0 41.0 32.0 41.0 26 36.61551293836767 38.0 35.0 41.0 32.0 41.0 27 36.52807766813533 38.0 35.0 40.0 31.0 41.0 28 36.52725080979017 38.0 35.0 40.0 31.0 41.0 29 36.52004355660807 38.0 35.0 40.0 31.0 41.0 30 36.481477062783995 38.0 35.0 40.0 31.0 41.0 31 36.34697844996128 38.0 35.0 40.0 31.0 41.0 32 36.20280373251719 38.0 35.0 40.0 31.0 41.0 33 36.09628451650855 38.0 35.0 40.0 30.0 41.0 34 36.007438966613265 38.0 35.0 40.0 30.0 41.0 35 35.934885077724 38.0 35.0 40.0 30.0 41.0 36 35.7551595891776 38.0 35.0 40.0 30.0 41.0 37 35.69366381001706 38.0 35.0 40.0 30.0 41.0 38 35.65071544969991 38.0 35.0 40.0 29.0 41.0 39 35.642267564188415 37.0 35.0 40.0 29.0 41.0 40 35.51168877024303 37.0 35.0 40.0 29.0 41.0 41 35.459735308782285 37.0 34.0 40.0 29.0 41.0 42 35.4102589742405 37.0 34.0 40.0 29.0 41.0 43 35.30350321743754 37.0 34.0 40.0 28.0 41.0 44 35.172882356470424 37.0 34.0 40.0 28.0 41.0 45 35.14786627100679 37.0 34.0 40.0 28.0 41.0 46 35.07859567868243 36.0 34.0 40.0 27.0 41.0 47 35.019787361549504 36.0 34.0 40.0 27.0 41.0 48 34.94919131322897 36.0 34.0 40.0 27.0 41.0 49 34.88737141111411 36.0 34.0 40.0 27.0 41.0 50 34.742929119826876 36.0 34.0 40.0 27.0 41.0 51 34.36046334410755 35.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 5.0 13 8.0 14 14.0 15 35.0 16 76.0 17 218.0 18 469.0 19 949.0 20 1629.0 21 2611.0 22 4127.0 23 5825.0 24 9130.0 25 13237.0 26 17644.0 27 20514.0 28 23345.0 29 26654.0 30 32457.0 31 39980.0 32 51051.0 33 68749.0 34 130228.0 35 227359.0 36 87638.0 37 114666.0 38 184773.0 39 386550.0 40 123.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.7716353796066 24.807543375581957 30.873401022159662 12.54742022265178 2 29.548082950649867 27.43452543916936 29.697386396628573 13.320005213552202 3 29.4987059218643 25.1936634652054 31.25159044375191 14.056040169178392 4 27.039026472569887 27.452110833499415 30.30639273909412 15.20246995483657 5 24.275430031853702 32.92365111405197 28.68653655313858 14.11438230095575 6 23.29761314477193 40.867215101095326 25.08711666426448 10.748055089868261 7 89.35738831378136 3.9227152952242896 5.200794170200411 1.5191022207939358 8 90.27231155525917 3.269159287122595 4.961701769642368 1.4968273879758658 9 85.0291055516745 6.471425113460275 6.258607360901255 2.2408619739639617 10 48.70781832839448 32.23375195766816 11.75980144365743 7.298628270279925 11 43.87411064454263 19.553165474422908 23.230512796994898 13.342211084039565 12 42.61899622569164 19.84777255119936 23.713249111937586 13.819982111171413 13 23.16141254162739 37.71480903985816 22.325864942792297 16.797913475722158 14 15.060959252227658 40.2110385244268 25.80273877000166 18.92526345334388 15 14.167966031914386 28.827219707779015 42.20191204958116 14.802902210725435 16 17.746214485261717 23.41057344246852 42.43238415880094 16.410827913468825 17 17.901172842358317 24.606311294581563 26.712972572991454 30.779543290068666 18 21.025925008982345 28.223316577785717 31.167732249613294 19.583026163618648 19 28.48027022199664 28.02311893174591 24.230949328548267 19.26566151770918 20 32.4638102929037 25.345380592758815 25.939697958783974 16.251111155553502 21 24.135712349843143 30.363769398241597 27.18908850418636 18.311429747728898 22 23.336507899290172 25.932387951729126 26.006591419568885 24.724512729411813 23 20.669044947578286 30.576587150800616 26.280371872472095 22.473996029149 24 19.781361826729384 25.989488761553776 37.05746010356763 17.17168930814921 25 17.345336456867166 29.557806639279427 33.581689673649564 19.515167230203843 26 16.693435544702417 37.867491640041465 25.93818078750844 19.500892027747682 27 18.25288072895942 37.10842326595943 28.047462634485164 16.59123337059598 28 14.89917362439115 31.892595307665093 36.62637657432381 16.58185449361995 29 15.878024946433507 26.791175856012174 36.61175656021412 20.719042637340205 30 19.039465072993178 32.755107177806266 30.391906029169686 17.813521720030867 31 28.785980234016773 28.495579859413393 23.53574007270009 19.182699833869744 32 28.754809260537616 29.429053967851143 24.849610397312677 16.966526374298567 33 26.154032882618527 29.87020599737805 24.69858289306632 19.2771782269371 34 19.162355946311447 28.84880491729003 28.147802825662538 23.841036310735987 35 19.85108274307325 26.947444497392187 30.719201250700827 22.48227150883373 36 27.41831929145343 27.29598011678081 27.965397460944907 17.320303130820854 37 20.288441844411327 33.447902752079735 28.951765677034235 17.311889726474707 38 19.077187467889413 33.3390112318948 25.945490794563288 21.6383105056525 39 19.843014150380636 33.26735937029117 27.533141572079085 19.356484907249115 40 24.539900570111588 28.2830379561772 25.64867692320424 21.528384550506978 41 17.54801674681239 25.708674150918544 29.5812538317195 27.16205527054957 42 20.438710763019916 26.325680123746004 26.035693523126863 27.199915590107217 43 21.618587279070553 27.493695118915195 25.414204998803502 25.473512603210747 44 19.413723641735174 31.122975696985034 28.405239206188405 21.058061455091384 45 17.933378250798064 37.45564860106464 23.24444318779753 21.366529960339765 46 20.96468645931533 35.493187556161196 24.486385801483657 19.05574018303982 47 20.786763646093593 28.51771676757005 27.44183544622421 23.253684140112146 48 21.767407988734313 24.838024725754053 32.28450823306785 21.110059052443784 49 19.36303632866619 26.102173209927543 31.749912245434174 22.78487821597209 50 17.941308918829268 32.20520155275584 29.155480401940046 20.698009126474844 51 17.646012218745753 33.72775189008508 25.445100122959836 23.181135768209334 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 580.0 1 1646.0 2 2712.0 3 5987.5 4 9263.0 5 7122.5 6 4982.0 7 4866.0 8 4750.0 9 4788.5 10 4827.0 11 4892.5 12 4958.0 13 4768.5 14 4579.0 15 4329.0 16 4079.0 17 4164.5 18 4250.0 19 3857.0 20 3464.0 21 4283.0 22 5102.0 23 5087.0 24 5072.0 25 8297.5 26 13294.5 27 15066.0 28 20588.0 29 26110.0 30 30519.5 31 34929.0 32 37231.0 33 39533.0 34 46464.0 35 53395.0 36 55231.0 37 57067.0 38 64505.5 39 71944.0 40 88199.5 41 104455.0 42 126260.5 43 148066.0 44 150796.0 45 153526.0 46 143051.0 47 132576.0 48 122312.0 49 112048.0 50 101866.0 51 91684.0 52 83883.5 53 76083.0 54 68349.5 55 60616.0 56 55439.5 57 50263.0 58 47504.5 59 44746.0 60 42881.0 61 41016.0 62 34271.0 63 27526.0 64 21727.5 65 15929.0 66 12857.5 67 9786.0 68 7878.0 69 5970.0 70 4803.5 71 3637.0 72 2900.0 73 2163.0 74 1481.5 75 605.0 76 410.0 77 299.5 78 189.0 79 183.0 80 177.0 81 163.5 82 150.0 83 89.5 84 29.0 85 23.0 86 17.0 87 15.0 88 13.0 89 8.5 90 4.0 91 3.0 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1450067.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.590612689978464 #Duplication Level Percentage of deduplicated Percentage of total 1 81.21585539237152 13.474208011001352 2 8.39134861387733 2.784352295988529 3 2.4404402125032165 1.214651950760688 4 1.1278583208380573 0.748474422807747 5 0.6010949814911473 0.49862670139046994 6 0.3960148170058151 0.39420770690617046 7 0.28771741650794763 0.3341385755011203 8 0.1940140689872476 0.25750498199793503 9 0.16255857393063364 0.24272517055665357 >10 1.9288254096407194 8.140277086297122 >50 1.217749154359844 15.005301437681007 >100 2.026111366510621 55.13809673104612 >500 0.007496403822649781 0.7640459513113327 >1k 0.002498801274216594 0.6443744385901148 >5k 4.16466879036099E-4 0.35901453816365386 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5196 0.3583282703488873 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2079 0.14337268553797858 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 2013 0.1388211717113761 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1585 0.10930529416916597 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03730862091199924 0.0 2 0.0 0.0 0.0 0.13620060314454435 0.0 3 0.0 0.0 0.0 0.19854255010285732 0.0 4 0.0 0.0 0.0 0.30591689901225255 0.0 5 0.0 0.0 0.0 0.5228723914136382 0.0 6 0.0 0.0 0.0 0.6967953894544183 0.0 7 0.0 0.0 0.0 0.8056869096393477 0.0 8 0.0 0.0 0.0 1.0520203549215312 0.0 9 0.0 0.0 0.0 1.1266375967455298 0.0 10 0.0 0.0 0.0 1.2747686831022291 0.0 11 0.0 0.0 0.0 1.5421356392497727 0.0 12 0.0 0.0 0.0 1.7398506413841568 0.0 13 0.0 0.0 0.0 1.8223295889086504 0.0 14 0.0 0.0 0.0 1.8553625453168716 0.0 15 0.0 0.0 0.0 1.9146011873934101 0.0 16 0.0 0.0 0.0 2.0479743349790045 0.0 17 6.89623307060984E-5 0.0 0.0 2.2096910004848054 0.0 18 6.89623307060984E-5 0.0 0.0 2.396096180383389 0.0 19 6.89623307060984E-5 0.0 0.0 2.5085047794343294 0.0 20 6.89623307060984E-5 0.0 0.0 2.6318783890675395 0.0 21 6.89623307060984E-5 0.0 0.0 2.7929054312662793 0.0 22 6.89623307060984E-5 0.0 0.0 2.9573805900003243 0.0 23 6.89623307060984E-5 0.0 0.0 3.1342689682614666 0.0 24 6.89623307060984E-5 0.0 0.0 3.267159379532118 0.0 25 6.89623307060984E-5 0.0 0.0 3.3816368485042414 0.0 26 6.89623307060984E-5 0.0 0.0 3.4854941185476256 0.0 27 6.89623307060984E-5 0.0 0.0 3.594109789409731 0.0 28 6.89623307060984E-5 0.0 0.0 3.7174833990429406 0.0 29 6.89623307060984E-5 0.0 0.0 3.847960128738879 0.0 30 6.89623307060984E-5 0.0 0.0 4.018848784228591 0.0 31 1.379246614121968E-4 0.0 0.0 4.178634504474621 0.0 32 1.379246614121968E-4 0.0 0.0 4.318696998138707 0.0 33 1.379246614121968E-4 0.0 0.0 4.452001183393595 0.0 34 1.379246614121968E-4 0.0 0.0 4.602821800647832 0.0 35 1.379246614121968E-4 0.0 0.0 4.79198547377466 0.0 36 1.379246614121968E-4 0.0 0.0 4.9586674270913 0.0 37 1.379246614121968E-4 0.0 0.0 5.114867106140613 0.0 38 1.379246614121968E-4 0.0 0.0 5.2699633878986285 0.0 39 1.379246614121968E-4 0.0 0.0 5.441472704364695 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCATA 35 1.2122291E-7 45.000004 34 TCCTCGA 30 2.1658961E-6 45.000004 39 GATCACG 35 1.2122291E-7 45.000004 1 GGTGCGT 30 2.1658961E-6 45.000004 8 TCCGTAC 35 1.2122291E-7 45.000004 21 CGAGCCT 35 1.2122291E-7 45.000004 35 ATACGAC 35 1.2122291E-7 45.000004 10 AGGGCGT 30 2.1658961E-6 45.000004 6 TCGACAG 60 0.0 45.000004 1 CGATAAG 30 2.1658961E-6 45.000004 10 CACCCGT 30 2.1658961E-6 45.000004 25 CGAAGCA 30 2.1658961E-6 45.000004 28 ACGCGAG 20 7.0338993E-4 45.0 1 TCCGCGA 25 3.8913127E-5 45.0 37 CGTATCT 25 3.8913127E-5 45.0 36 GATCGAC 20 7.0338993E-4 45.0 11 CGACGTG 20 7.0338993E-4 45.0 15 TTTACGC 20 7.0338993E-4 45.0 21 CGAAACG 25 3.8913127E-5 45.0 37 CCGATAT 20 7.0338993E-4 45.0 28 >>END_MODULE