##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548108_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1704720 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.534460204608383 31.0 31.0 33.0 30.0 34.0 2 31.947015932235207 31.0 31.0 34.0 30.0 34.0 3 32.06642439814163 33.0 31.0 34.0 30.0 34.0 4 35.77264184147543 37.0 35.0 37.0 35.0 37.0 5 35.6559640292834 37.0 35.0 37.0 33.0 37.0 6 35.7066937678915 37.0 35.0 37.0 33.0 37.0 7 36.05941503590032 37.0 35.0 37.0 35.0 37.0 8 36.08234490121545 37.0 35.0 37.0 35.0 37.0 9 37.87439110235112 39.0 38.0 39.0 35.0 39.0 10 37.34085362992163 39.0 37.0 39.0 34.0 39.0 11 37.01064925618283 39.0 37.0 39.0 33.0 39.0 12 36.475620043174246 39.0 35.0 39.0 32.0 39.0 13 36.27282955558684 39.0 35.0 39.0 32.0 39.0 14 37.269549251489984 39.0 35.0 41.0 32.0 41.0 15 37.47551093434699 40.0 35.0 41.0 32.0 41.0 16 37.59726875967901 40.0 35.0 41.0 33.0 41.0 17 37.54125369562157 39.0 35.0 41.0 33.0 41.0 18 37.45316239617063 39.0 35.0 41.0 32.0 41.0 19 37.41413369937585 39.0 35.0 41.0 32.0 41.0 20 37.32018689286217 39.0 35.0 41.0 32.0 41.0 21 37.19289971373598 39.0 35.0 41.0 32.0 41.0 22 37.1081550049275 39.0 35.0 41.0 32.0 41.0 23 37.01502592801164 39.0 35.0 41.0 32.0 41.0 24 37.05477263128255 39.0 35.0 41.0 32.0 41.0 25 37.036153151250645 39.0 35.0 41.0 32.0 41.0 26 36.906926650710965 39.0 35.0 41.0 31.0 41.0 27 36.86539490356188 39.0 35.0 41.0 31.0 41.0 28 36.809163968276316 39.0 35.0 41.0 31.0 41.0 29 36.75495917218077 39.0 35.0 41.0 31.0 41.0 30 36.657952625651134 38.0 35.0 41.0 31.0 41.0 31 36.606232695105355 39.0 35.0 41.0 31.0 41.0 32 36.51292177014407 39.0 35.0 41.0 30.0 41.0 33 36.42194260641044 39.0 35.0 41.0 30.0 41.0 34 36.327420925430566 38.0 35.0 41.0 30.0 41.0 35 36.2480331080764 38.0 35.0 41.0 30.0 41.0 36 36.112793889905674 38.0 35.0 41.0 30.0 41.0 37 36.070291308836644 38.0 35.0 41.0 30.0 41.0 38 35.952501290534514 38.0 35.0 41.0 29.0 41.0 39 35.878951382045145 38.0 35.0 40.0 29.0 41.0 40 35.752411539724996 38.0 35.0 40.0 28.0 41.0 41 35.68582758458867 38.0 35.0 40.0 28.0 41.0 42 35.654545027922474 38.0 35.0 40.0 28.0 41.0 43 35.59942043268103 38.0 34.0 40.0 28.0 41.0 44 35.44292845745929 38.0 34.0 40.0 27.0 41.0 45 35.38928035102539 38.0 34.0 40.0 27.0 41.0 46 35.31746503824675 38.0 34.0 40.0 27.0 41.0 47 35.241874325402414 38.0 34.0 40.0 27.0 41.0 48 35.12052771129569 37.0 34.0 40.0 27.0 41.0 49 35.01594748697733 37.0 34.0 40.0 26.0 41.0 50 34.86711366089446 37.0 34.0 40.0 26.0 41.0 51 34.5093581350603 36.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 4.0 11 4.0 12 9.0 13 9.0 14 14.0 15 41.0 16 118.0 17 266.0 18 551.0 19 1268.0 20 2162.0 21 3416.0 22 5205.0 23 7536.0 24 10727.0 25 14988.0 26 19916.0 27 23532.0 28 26899.0 29 31441.0 30 38094.0 31 46431.0 32 58697.0 33 77205.0 34 129456.0 35 186793.0 36 118454.0 37 158310.0 38 255057.0 39 488030.0 40 85.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.407703317846924 24.094690037073537 29.489476277629173 12.008130367450374 2 30.612827913088363 26.029435919095217 29.892885635177624 13.464850532638792 3 31.091616218499222 25.822422450607725 29.69842554789056 13.387535783002487 4 27.82562532263363 27.061746210521378 29.275306208644235 15.837322258200759 5 24.699598761086865 31.655638462621425 28.86086864705054 14.783894129241165 6 24.468475761415366 40.47421277394528 25.03015157914496 10.027159885494392 7 89.86901074663288 3.6140245905485946 4.877340560326623 1.639624102491905 8 90.2968229386644 2.9403069125721526 5.02897836594866 1.733891782814773 9 83.87846684499507 6.447686423576893 6.715237692993571 2.958609038434464 10 43.0573935895631 36.07906283729879 12.374348866676051 8.489194706462058 11 34.51739875170116 21.986660565958047 26.91978741376883 16.576153268571964 12 33.82438171664555 21.052313576423106 27.557780749917875 17.56552395701347 13 26.123410296119008 28.0585668027594 27.484278943169553 18.333743957952038 14 18.622061100943263 31.715413674973014 29.41439063306584 20.24813459101788 15 17.347012999202217 28.693216481298983 37.181003331925474 16.778767187573326 16 23.38155239570135 25.89005819137454 34.189016378056216 16.539373034867896 17 23.261004739781313 25.57962597963302 27.024848655497678 24.13452062508799 18 23.056161715706978 26.77237317565348 30.96825285090807 19.203212257731476 19 26.23463090712844 28.063846262142754 26.37958139753156 19.32194143319724 20 28.54005349852175 28.10872166690131 26.446630531700222 16.904594302876717 21 26.808332160120134 26.46182364259233 29.21306724858041 17.51677694870712 22 25.531641559904266 22.85794734619175 29.67425735604674 21.936153737857246 23 21.762107560185836 26.43618893425313 30.28057393589563 21.5211295696654 24 21.957330236050495 25.010500258106905 33.44948143976724 19.582688066075367 25 21.57175371908583 27.475890468815994 30.91105870758834 20.04129710450983 26 20.41015533342719 33.089129006523066 26.07038105964616 20.430334600403587 27 19.69648974611666 31.67405790980337 29.75010558918767 18.8793467548923 28 18.216246656342392 29.298301187291752 33.19624337134544 19.289208785020413 29 19.915352667886808 27.45101834905439 32.76268243465202 19.870946548406778 30 21.3960650429396 28.590091041344035 29.759491294758085 20.25435262095828 31 25.382936787272982 27.371298512365666 26.954397203059738 20.29136749730161 32 26.449622225350787 27.789724998826788 27.1057417053827 18.65491107043972 33 25.367685015721058 27.226641325261625 27.33545684921864 20.070216809798676 34 20.61711014125487 27.470259045473743 30.054378431648598 21.85825238162279 35 21.700279224740722 27.283131540663568 29.47387254211835 21.542716692477356 36 24.885201088741844 27.157480407339623 28.248451358580883 19.70886714533765 37 21.88963583462387 29.252604533295788 28.78736684030222 20.070392791778122 38 21.97275798958187 29.803838753578297 26.40638931906706 21.81701393777277 39 20.828288516589236 28.690928715566194 28.540581444460088 21.940201323384485 40 23.265990895865595 26.5479374912009 28.414285043878174 21.77178656905533 41 20.250539678070297 25.43221174151767 29.561159603923226 24.756088976488808 42 20.846590642451545 26.59152236144352 27.884989910366514 24.67689708573842 43 21.047796705617344 27.241130508235955 28.148141630297058 23.562931155849643 44 21.116664320240275 28.068128490309256 28.97560889764888 21.839598291801586 45 20.002111783753342 30.296353653385893 27.294101084048993 22.407433478811768 46 21.74855694776855 29.530128114881038 27.80744051809095 20.913874419259468 47 20.903608803791826 27.8841686611291 28.772349711389555 22.439872823689523 48 21.64818855882491 26.59908958655967 30.066286545591066 21.686435309024358 49 21.574334788117696 25.69770988784082 30.598983997372002 22.128971326669483 50 20.103653385893285 28.271153033929323 29.59893706884415 22.02625651133324 51 19.507778403491482 29.299885025106764 27.62348068891079 23.568855882490965 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 714.0 1 2003.5 2 3293.0 3 6127.5 4 8962.0 5 6648.5 6 4335.0 7 4132.5 8 3930.0 9 4069.0 10 4208.0 11 4196.0 12 4184.0 13 4118.0 14 4052.0 15 3922.5 16 3793.0 17 4072.5 18 4352.0 19 4627.0 20 4902.0 21 5571.0 22 6240.0 23 7671.5 24 9103.0 25 11610.0 26 16814.5 27 19512.0 28 23876.5 29 28241.0 30 33508.0 31 38775.0 32 44170.5 33 49566.0 34 55065.0 35 60564.0 36 64611.5 37 68659.0 38 76494.0 39 84329.0 40 95575.0 41 106821.0 42 118478.5 43 130136.0 44 135736.0 45 141336.0 46 141711.5 47 142087.0 48 138511.5 49 134936.0 50 129844.0 51 124752.0 52 114327.0 53 103902.0 54 94445.0 55 84988.0 56 81700.0 57 78412.0 58 73546.0 59 68680.0 60 61553.0 61 54426.0 62 47366.5 63 40307.0 64 33143.0 65 25979.0 66 21885.5 67 17792.0 68 14402.0 69 11012.0 70 8335.5 71 5659.0 72 4549.5 73 3440.0 74 2808.5 75 1523.5 76 870.0 77 802.0 78 734.0 79 472.0 80 210.0 81 166.5 82 123.0 83 86.5 84 50.0 85 41.5 86 33.0 87 23.0 88 13.0 89 11.5 90 10.0 91 5.5 92 1.0 93 0.5 94 0.0 95 1.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1704720.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.058090284825024 #Duplication Level Percentage of deduplicated Percentage of total 1 80.95256027941655 16.237537628722773 2 6.927101623037088 2.778888595340718 3 2.056038540364845 1.2372062001515378 4 0.9844185647649859 0.7898222580045584 5 0.6274741809842623 0.6292966886789485 6 0.4191216842135948 0.5044068349370525 7 0.33367204950802487 0.4684976866188198 8 0.29257060400599666 0.46947260718704564 9 0.23797089117813972 0.4295917458370258 >10 4.085513882204237 21.5968087546467 >50 2.230840242934895 32.17919136031666 >100 0.8486150366303106 21.65616175504663 >500 0.0026372704867319648 0.34660344487646955 >1k 0.001465150270406647 0.6765144396350966 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4836 0.28368295086583134 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 2175 0.127586935097846 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1975 0.11585480313482566 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.030210239804777324 0.0 2 0.0 0.0 0.0 0.10775963208034164 0.0 3 0.0 0.0 0.0 0.15697592566521187 0.0 4 0.0 0.0 0.0 0.2347012999202215 0.0 5 0.0 0.0 0.0 0.4472875310901497 0.0 6 0.0 0.0 0.0 0.6023863156412783 0.0 7 0.0 0.0 0.0 0.7090900558449481 0.0 8 0.0 0.0 0.0 0.9393918062790371 0.0 9 0.0 0.0 0.0 1.0055610305504716 0.0 10 0.0 0.0 0.0 1.1641207940306912 0.0 11 0.0 0.0 0.0 1.4351330423764606 0.0 12 0.0 0.0 0.0 1.644962222535079 0.0 13 0.0 0.0 0.0 1.7294922333286404 0.0 14 0.0 0.0 0.0 1.765040593176592 0.0 15 0.0 0.0 0.0 1.8356680275939743 0.0 16 0.0 0.0 0.0 1.9824956591111738 0.0 17 0.0 0.0 0.0 2.169095217983012 0.0 18 0.0 0.0 0.0 2.3676615514571306 0.0 19 0.0 0.0 0.0 2.5008212492374113 0.0 20 0.0 0.0 0.0 2.648294148012577 0.0 21 0.0 0.0 0.0 2.829672908160871 0.0 22 0.0 0.0 0.0 3.0309376319864847 0.0 23 0.0 0.0 0.0 3.228624055563377 0.0 24 0.0 0.0 0.0 3.3772115068750295 0.0 25 0.0 0.0 0.0 3.5171171805340466 0.0 26 0.0 0.0 0.0 3.6544417851611994 0.0 27 0.0 0.0 0.0 3.7990403116054248 0.0 28 0.0 0.0 0.0 3.9546670420948895 0.0 29 0.0 0.0 0.0 4.124841616218499 0.0 30 0.0 0.0 0.0 4.38758271153034 0.0 31 0.0 0.0 0.0 4.57858181988831 0.0 32 0.0 0.0 0.0 4.748052466094139 0.0 33 0.0 0.0 0.0 4.9274367638087195 0.0 34 0.0 0.0 0.0 5.1260617579426535 0.0 35 0.0 0.0 0.0 5.33747477591628 0.0 36 0.0 0.0 0.0 5.520554695199212 0.0 37 0.0 0.0 0.0 5.713724247970341 0.0 38 0.0 0.0 0.0 5.938394575062181 0.0 39 0.0 0.0 0.0 6.279740954526257 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGAA 20 7.0342456E-4 45.000004 18 GTACGTC 20 7.0342456E-4 45.000004 25 GTACGAA 25 3.8916012E-5 45.0 25 TATAGCG 175 0.0 43.714287 1 CGTAAGG 275 0.0 43.363632 2 TAACGGG 390 0.0 41.538464 3 ATAACGG 130 0.0 41.538464 2 ATAGCGG 360 0.0 40.0 2 CGTTAAC 45 1.9292202E-8 40.0 37 TATCGCG 45 1.9292202E-8 40.0 1 CGGTCTA 445 0.0 39.4382 31 TAGGGAC 1725 0.0 39.391304 5 CTAGACG 80 0.0 39.375004 1 CTATCGG 40 3.459536E-7 39.375004 25 TCACGAC 440 0.0 39.375 25 CTCACGA 440 0.0 39.375 24 CACGACG 440 0.0 39.375 26 CGGGATC 605 0.0 39.049587 6 ACGTAAG 75 0.0 39.0 1 TCGTAAG 110 0.0 38.863636 1 >>END_MODULE