SRR1548105_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548105_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1204108
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4192	0.34814152883296184	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2027	0.1683403814275796	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1858	0.15430509555621258	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1737	0.1442561630684291	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATCG	30	2.1655887E-6	45.000004	16
AACCGAG	30	2.1655887E-6	45.000004	1
GGTCGAC	20	7.0334197E-4	45.000004	9
ACGCATG	20	7.0334197E-4	45.000004	1
CGTTGCC	20	7.0334197E-4	45.000004	20
CACGCTA	20	7.0334197E-4	45.000004	30
CCGTGTG	20	7.0334197E-4	45.000004	13
ATTCGGT	20	7.0334197E-4	45.000004	37
CGATTAC	20	7.0334197E-4	45.000004	24
ATCGTTC	30	2.1655887E-6	45.000004	19
CCGTCCC	20	7.0334197E-4	45.000004	10
CTAACGG	80	0.0	45.000004	2
TCGGACG	20	7.0334197E-4	45.000004	27
CGTAGTG	20	7.0334197E-4	45.000004	18
TCGCTGA	20	7.0334197E-4	45.000004	15
CCGAGTT	30	2.1655887E-6	45.000004	43
TCGCTAG	20	7.0334197E-4	45.000004	1
TCCCGTA	20	7.0334197E-4	45.000004	43
TCCGTAA	20	7.0334197E-4	45.000004	32
TCGTAGC	20	7.0334197E-4	45.000004	24