##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548104_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3006556 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.5181047683795 31.0 31.0 33.0 30.0 34.0 2 31.918231358404768 31.0 31.0 34.0 30.0 34.0 3 31.98522162900009 33.0 31.0 34.0 30.0 34.0 4 35.70318530571192 37.0 35.0 37.0 33.0 37.0 5 35.61811022312573 37.0 35.0 37.0 33.0 37.0 6 35.674318389546045 37.0 35.0 37.0 33.0 37.0 7 36.0861420841654 37.0 35.0 37.0 35.0 37.0 8 36.12868078958117 37.0 35.0 37.0 35.0 37.0 9 37.97284268112751 39.0 38.0 39.0 35.0 39.0 10 37.34057306765615 39.0 37.0 39.0 34.0 39.0 11 36.935147723840835 39.0 37.0 39.0 33.0 39.0 12 36.42293840527168 38.0 35.0 39.0 32.0 39.0 13 36.19831062518044 39.0 35.0 39.0 32.0 39.0 14 37.20486929230655 39.0 35.0 41.0 32.0 41.0 15 37.4215996642005 39.0 35.0 41.0 32.0 41.0 16 37.54176772360135 39.0 35.0 41.0 33.0 41.0 17 37.48329018318634 39.0 35.0 41.0 33.0 41.0 18 37.40743262390589 39.0 35.0 41.0 32.0 41.0 19 37.35893427562966 39.0 35.0 41.0 32.0 41.0 20 37.23558849394457 39.0 35.0 41.0 32.0 41.0 21 37.11803804752015 39.0 35.0 41.0 32.0 41.0 22 37.04237073914472 39.0 35.0 41.0 32.0 41.0 23 36.96995865036274 39.0 35.0 41.0 32.0 41.0 24 36.97735847926997 39.0 35.0 41.0 32.0 41.0 25 36.95790665465736 39.0 35.0 41.0 32.0 41.0 26 36.835228746778704 39.0 35.0 41.0 31.0 41.0 27 36.782499311504594 39.0 35.0 41.0 31.0 41.0 28 36.74133194259478 38.0 35.0 41.0 31.0 41.0 29 36.69494165417175 38.0 35.0 41.0 31.0 41.0 30 36.61753913780419 38.0 35.0 41.0 31.0 41.0 31 36.52877544938461 38.0 35.0 41.0 31.0 41.0 32 36.41840564419888 38.0 35.0 41.0 30.0 41.0 33 36.32001665693238 38.0 35.0 41.0 30.0 41.0 34 36.21089878252725 38.0 35.0 41.0 30.0 41.0 35 36.11711572975857 38.0 35.0 41.0 30.0 41.0 36 35.9643884896872 38.0 35.0 41.0 29.0 41.0 37 35.90744659337794 38.0 35.0 40.0 29.0 41.0 38 35.798102879174714 38.0 35.0 40.0 29.0 41.0 39 35.757874790956826 38.0 35.0 40.0 29.0 41.0 40 35.64319107976036 38.0 35.0 40.0 28.0 41.0 41 35.588053573590514 38.0 35.0 40.0 28.0 41.0 42 35.56019378983794 38.0 35.0 40.0 28.0 41.0 43 35.47180395109886 38.0 34.0 40.0 27.0 41.0 44 35.33066904458124 38.0 34.0 40.0 27.0 41.0 45 35.29994319081368 38.0 34.0 40.0 27.0 41.0 46 35.24233375330444 38.0 34.0 40.0 27.0 41.0 47 35.15650132576942 38.0 34.0 40.0 27.0 41.0 48 35.04565689114056 37.0 34.0 40.0 26.0 41.0 49 34.956278545950916 37.0 34.0 40.0 26.0 41.0 50 34.80287046042049 37.0 34.0 40.0 26.0 41.0 51 34.45127348368033 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 4.0 12 4.0 13 7.0 14 14.0 15 68.0 16 164.0 17 429.0 18 1008.0 19 1985.0 20 3539.0 21 5846.0 22 9162.0 23 13510.0 24 19870.0 25 28262.0 26 37376.0 27 44239.0 28 49762.0 29 57216.0 30 68811.0 31 84148.0 32 105320.0 33 136123.0 34 227005.0 35 354069.0 36 204440.0 37 267983.0 38 428150.0 39 857843.0 40 197.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.742199380287612 24.40406897460084 31.22290088726104 12.63083075785051 2 28.678793942304747 26.258582910147027 32.03010354704852 13.03251960049971 3 28.536671194549513 25.457001299826114 32.569025822236476 13.437301683387904 4 25.0789940383615 27.361705552798615 33.17746285118255 14.381837557657331 5 23.520233782440773 31.921241447024435 30.624807919759352 13.933716850775438 6 21.808341504365792 40.7605579274093 27.074433338344605 10.356667229880303 7 91.00652041738122 2.8624113437434726 4.980416130615894 1.1506521082594172 8 92.26031379425496 1.9209687097130403 4.6297823822340245 1.1889351137979802 9 87.84033957790908 4.896133649265139 5.575648682412701 1.687878090413084 10 44.05588986202153 37.44919436059065 10.612408350285177 7.882507427102638 11 32.72175871661795 23.800388218280318 27.40800437444039 16.069848690661342 12 33.01787826336845 22.535851652189415 26.888971966595665 17.557298117846464 13 24.443881969935035 30.646127994955023 27.05048567197817 17.85950436313177 14 17.060716647220275 34.656929722912196 28.395878872703516 19.88647475716401 15 15.788862738628517 29.798314084287803 37.828265962782666 16.584557214301014 16 20.76468889985751 26.721438083973826 36.38618405910284 16.127688957065825 17 20.759899366584225 26.353941187192255 27.68859119870044 25.197568247523076 18 22.17610448632921 27.563930291004056 31.35301654118533 18.906948681481403 19 25.271174060952134 28.965035076679097 26.994541262494366 18.769249599874406 20 27.303632461860015 28.165415844574326 27.297246417495636 17.233705276070026 21 24.30106074857744 28.186769180417727 29.827018023279795 17.68515204772504 22 23.345349296670342 24.139048133478973 29.690316761104736 22.825285808745953 23 19.83475444994206 28.545950915266506 29.70638165395888 21.912912980832555 24 19.752268043568787 27.213828712985887 34.50210140772366 18.53180183572167 25 19.335778212679227 29.0179860278671 31.934978094537403 19.71125766491627 26 18.68579863471693 34.595863173677785 26.38447446180946 20.33386372979582 27 18.302236845081215 33.51605624508574 29.82325957008617 18.35844733974687 28 15.956496403193555 30.841667342966506 34.59197167789325 18.6098645759467 29 17.586367923963497 27.58348755186998 34.28384503731179 20.54629948685473 30 19.405259705789614 30.307468079756372 31.038936244660004 19.248335969794013 31 24.684156889144923 28.436057735162755 27.201755097859476 19.678030277832843 32 25.555286513871682 28.58366848979364 27.756276616833347 18.10476837950133 33 24.48219823612133 28.91354759399126 27.30017335449598 19.30408081539143 34 19.18284575441136 28.61243895008109 29.700793865140046 22.503921430367505 35 19.775783321514716 27.739380207785917 30.724855948134678 21.75998052256469 36 24.40410223524857 27.67452194471016 28.938925468210137 18.982450351831133 37 20.269304812549642 30.932701735806685 29.784045266411134 19.013948185232536 38 20.04732324959189 31.704415284465014 27.155888664638212 21.092372801304883 39 20.071769825674295 30.350706921806882 28.916175185162025 20.6613480673568 40 22.86563097444385 27.49937137375788 28.279400084349003 21.355597567449266 41 18.57713609857924 26.79461150898237 29.581221836546533 25.04703055589186 42 20.229990726931412 27.090797577028336 28.157433289118845 24.521778406921406 43 21.0360292640483 27.2936875281884 27.845082546275542 23.82520066148776 44 19.830231001850624 29.66217825312417 28.42202174182021 22.085569003204995 45 18.8764154068642 32.871797498533205 26.245345172350028 22.00644192225257 46 21.17988156548556 31.335554701126473 26.581710102855226 20.902853630532743 47 20.03208987293102 28.778309800316375 28.558889307233926 22.630711019518678 48 20.68253509996155 27.71902469137445 30.774547355845026 20.82389285281897 49 20.606634301839048 26.46396740988693 30.876491241141025 22.052907047133 50 19.37732076169544 29.960459741977196 29.43923213138222 21.22298736494514 51 18.355653445337456 31.20946358557765 27.50821870605437 22.926664263030524 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1172.0 1 2792.0 2 4412.0 3 15249.5 4 26087.0 5 18306.5 6 10526.0 7 9943.0 8 9360.0 9 9833.0 10 10306.0 11 10493.5 12 10681.0 13 10507.5 14 10334.0 15 10381.5 16 10429.0 17 9732.0 18 9035.0 19 9579.0 20 10123.0 21 11687.0 22 13251.0 23 14348.5 24 15446.0 25 20049.0 26 30731.5 27 36811.0 28 47205.0 29 57599.0 30 65106.0 31 72613.0 32 79496.0 33 86379.0 34 97415.5 35 108452.0 36 116262.0 37 124072.0 38 141084.5 39 158097.0 40 185016.5 41 211936.0 42 237675.5 43 263415.0 44 272934.5 45 282454.0 46 276843.5 47 271233.0 48 263419.5 49 255606.0 50 237833.5 51 220061.0 52 199510.5 53 178960.0 54 159160.0 55 139360.0 56 125367.0 57 111374.0 58 100052.0 59 88730.0 60 77890.5 61 67051.0 62 55942.5 63 44834.0 64 36114.5 65 27395.0 66 20988.5 67 14582.0 68 11865.0 69 9148.0 70 7119.5 71 5091.0 72 3844.0 73 2597.0 74 2008.5 75 1043.5 76 667.0 77 531.5 78 396.0 79 274.0 80 152.0 81 140.0 82 128.0 83 96.5 84 65.0 85 51.5 86 38.0 87 28.0 88 18.0 89 10.5 90 3.0 91 2.5 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3006556.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.41945605694601 #Duplication Level Percentage of deduplicated Percentage of total 1 78.9952613603569 16.130402680547732 2 8.708553513797796 3.556478515891137 3 2.9555693330523005 1.8105335435855605 4 1.3933962489260485 1.1380957389943542 5 0.810656792278339 0.8276585373596176 6 0.5285395472522584 0.6475494035685379 7 0.40492266928357806 0.5787810456328113 8 0.31549461312520277 0.5153782711130608 9 0.2655337024515693 0.48798483919631963 >10 3.071975385581626 15.204217454533584 >50 1.3094739855442992 19.551027291569596 >100 1.234379526796167 37.92588566528546 >500 0.0049289380689920715 0.6572199100259632 >1k 0.0011500855494314833 0.38396538388193724 >5k 0.0 0.0 >10k+ 1.6429793563306906E-4 0.5848217188143233 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17432 0.5797996112495494 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.6630323865579087E-4 0.0 0.0 0.033327169026620494 0.0 2 1.6630323865579087E-4 0.0 0.0 0.10793080188760829 0.0 3 1.6630323865579087E-4 0.0 0.0 0.16776670715596184 0.0 4 1.6630323865579087E-4 0.0 0.0 0.25939979165530264 0.0 5 1.6630323865579087E-4 0.0 0.0 0.5100852936050417 0.0 6 1.6630323865579087E-4 0.0 0.0 0.7398165874841514 0.0 7 1.6630323865579087E-4 0.0 0.0 0.8925827425133608 0.0 8 1.6630323865579087E-4 0.0 0.0 1.229247018848144 0.0 9 1.6630323865579087E-4 0.0 0.0 1.3387743318268477 0.0 10 1.6630323865579087E-4 0.0 0.0 1.568239540524108 0.0 11 1.6630323865579087E-4 0.0 0.0 1.9790085400039115 0.0 12 1.6630323865579087E-4 0.0 0.0 2.289662989812929 0.0 13 1.6630323865579087E-4 0.0 0.0 2.4108647901452693 0.0 14 1.6630323865579087E-4 0.0 0.0 2.4609553256283934 3.3260647731158176E-5 15 1.6630323865579087E-4 0.0 0.0 2.536989166341821 3.3260647731158176E-5 16 1.6630323865579087E-4 0.0 0.0 2.708547587339135 3.3260647731158176E-5 17 1.6630323865579087E-4 0.0 0.0 2.948456639423979 3.3260647731158176E-5 18 1.6630323865579087E-4 0.0 0.0 3.2091868569885276 3.3260647731158176E-5 19 1.6630323865579087E-4 0.0 0.0 3.4011340550450417 3.3260647731158176E-5 20 1.6630323865579087E-4 0.0 0.0 3.585497825418851 3.3260647731158176E-5 21 1.6630323865579087E-4 0.0 0.0 3.837846359755148 3.3260647731158176E-5 22 1.6630323865579087E-4 0.0 0.0 4.129010069993707 3.3260647731158176E-5 23 1.6630323865579087E-4 0.0 0.0 4.428821548642367 3.3260647731158176E-5 24 1.6630323865579087E-4 0.0 0.0 4.643485769099262 3.3260647731158176E-5 25 1.6630323865579087E-4 0.0 0.0 4.831874077848542 3.3260647731158176E-5 26 1.6630323865579087E-4 0.0 0.0 5.018433050972608 3.3260647731158176E-5 27 1.6630323865579087E-4 0.0 0.0 5.209049823119876 3.3260647731158176E-5 28 1.6630323865579087E-4 0.0 0.0 5.410409784484307 3.3260647731158176E-5 29 1.6630323865579087E-4 0.0 0.0 5.633322645578529 3.3260647731158176E-5 30 1.6630323865579087E-4 0.0 0.0 5.907689728712853 3.3260647731158176E-5 31 1.9956388638694904E-4 0.0 0.0 6.152421574718715 3.3260647731158176E-5 32 1.9956388638694904E-4 0.0 0.0 6.376265733949409 3.3260647731158176E-5 33 1.9956388638694904E-4 0.0 0.0 6.60230509593036 3.3260647731158176E-5 34 1.9956388638694904E-4 0.0 0.0 6.844442611413192 3.3260647731158176E-5 35 1.9956388638694904E-4 0.0 0.0 7.133810246674268 3.3260647731158176E-5 36 1.9956388638694904E-4 0.0 0.0 7.384695312510394 3.3260647731158176E-5 37 1.9956388638694904E-4 0.0 0.0 7.644294668052083 3.3260647731158176E-5 38 1.9956388638694904E-4 0.0 0.0 7.93309687230173 3.3260647731158176E-5 39 1.9956388638694904E-4 0.0 0.0 8.353079071203064 3.3260647731158176E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAGTCGA 20 7.0351065E-4 45.000004 16 TAATGCG 145 0.0 45.000004 1 CTTCGCG 60 0.0 44.999996 1 CGGTCTA 775 0.0 43.83871 31 TCGATAG 170 0.0 43.676468 1 CGACGGT 790 0.0 43.291138 28 CGGGTAT 175 0.0 42.428574 6 CGTTTTT 7700 0.0 42.136364 1 TAACGCG 55 6.184564E-11 40.909092 1 TCACGAC 870 0.0 40.344826 25 GGCGATA 825 0.0 40.09091 8 TACGGGA 1170 0.0 39.807693 4 TTAGGGA 4875 0.0 39.507694 4 CACCGTA 40 3.4607E-7 39.375004 25 TTGTGCG 295 0.0 38.898304 1 GTAGGGT 990 0.0 38.863636 4 TAGGGAT 6380 0.0 38.793102 5 ACGGTCT 885 0.0 38.64407 30 TAGGTCG 35 6.251659E-6 38.571426 1 GACGGTC 895 0.0 38.463688 29 >>END_MODULE