SRR1548103_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548103_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2132015
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7388	0.34652664263619154	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2867	0.1344737255600922	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2812	0.13189400637425158	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGA	20	7.034645E-4	45.0	34
CGATCTT	20	7.034645E-4	45.0	10
TATCGCC	20	7.034645E-4	45.0	41
TCGGTTA	20	7.034645E-4	45.0	36
CCGTTCG	25	3.8919323E-5	45.0	45
TACGTAA	25	3.8919323E-5	45.0	28
GTCAACG	30	2.16638E-6	44.999996	1
CTCGCTA	30	2.16638E-6	44.999996	21
CGATACG	60	0.0	44.999996	10
CTACGCG	75	0.0	42.0	1
CGTTTTT	4200	0.0	40.92857	1
GGCGATA	490	0.0	40.867348	8
ACGACGG	555	0.0	40.54054	27
TATCGCG	100	0.0	40.5	1
GGGCGAT	2130	0.0	40.24648	7
TTACGAG	140	0.0	40.178574	1
CGGTCTA	560	0.0	40.178574	31
CGTAAGG	265	0.0	39.905663	2
TACGGGA	880	0.0	39.886364	4
ACGGGAC	740	0.0	39.83108	5